Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Xusi, Han"'
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Here, the authors present VESPER, a program for EM density map search and alignment. Using benchmark datasets, they demonstrate that VESPER performs accurate global and local alignments and comparisons of EM maps.
Externí odkaz:
https://doaj.org/article/80c1de7ec4114f6c9d64b4218118b846
Publikováno v:
PLoS Computational Biology, Vol 15, Iss 4, p e1006969 (2019)
Proteins are involved in almost all functions in a living cell, and functions of proteins are realized by their tertiary structures. Obtaining a global perspective of the variety and distribution of protein structures lays a foundation for our unders
Externí odkaz:
https://doaj.org/article/92bf7d2ddb2246fcb97475ab97ea7388
Publikováno v:
Nature Communications
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)
An increasing number of density maps of biological macromolecules have been determined by cryo-electron microscopy (cryo-EM) and stored in the public database, EMDB. To interpret the structural information contained in EM density maps, alignment of m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2141f7631e4ed393a66a7f77bc13f18d
https://doi.org/10.1038/s41467-021-22401-y
https://doi.org/10.1038/s41467-021-22401-y
Autor:
Florent, Langenfeld, Apostolos, Axenopoulos, Halim, Benhabiles, Petros, Daras, Giachetti, Andrea, Xusi, Han, Karim, Hammoudi, Daisuke, Kihara, Lai, Tuan M., Haiguang, Liu, Mahmoud, Melkemi, Mylonas, Stelios K., Genki, Terashi, Yufan, Wang, Feryal, Windal, Matthieu, Montes
This track aimed at retrieving protein evolutionary classification based on their surfaces meshes only. Given that proteins are dynamic, non-rigid objects and that evolution tends to conserve patterns related to their activity and function, this trac
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::94cbf0a44255309c8dcc4a01144a05a6
Autor:
Xusi Han
Proteins are involved in almost all functions in a living cell, and functions of proteins are realized by their tertiary structures. Protein three-dimensional structures can be solved by multiple experimental methods, but computational approaches ser
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::58772318acdd61759db6255021004f93
Publikováno v:
Encyclopedia of Bioinformatics and Computational Biology (3)
Proteins are flexible molecules and exhibits conformational changes in the cellular environment. Motion is often essential for a protein to carry out its biological function. Different experimental conditions often yield different tertiary structures
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4117f744967fdd75983d378022a7ac4e
https://doi.org/10.1016/b978-0-12-809633-8.20148-9
https://doi.org/10.1016/b978-0-12-809633-8.20148-9
Publikováno v:
Biophysical Journal. 120:84a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::33b3abf05efba34e73d0c3e7851f4d13
https://doi.org/10.1016/j.bpj.2020.11.720
https://doi.org/10.1016/j.bpj.2020.11.720
Autor:
A. Roy, Lenna X. Peterson, Jian Zhang, Daisuke Kihara, Juan Esquivel-Rodríguez, Woong-Hee Shin, Xusi Han, Hyungrae Kim, Matthew R. Lee, Genki Terashi
Publikováno v:
Proteins: Structure, Function, and Bioinformatics. 85:513-527
We report the performance of protein-protein docking predictions by our group for recent rounds of the Critical Assessment of Prediction of Interactions (CAPRI), a community-wide assessment of state-of-the-art docking methods. Our prediction procedur
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ccb172afddee1c70bf4d68b82acbb697
https://doi.org/10.1002/prot.25165
https://doi.org/10.1002/prot.25165
Publikováno v:
Current protocols in bioinformatics. 60
With the rapid growth in the number of solved protein structures stored in the Protein Data Bank (PDB) and the Electron Microscopy Data Bank (EMDB), it is essential to develop tools to perform real-time structure similarity searches against the entir
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f7b34d0c2c9e5fb4c2fb6fcbd6233c7
https://pubmed.ncbi.nlm.nih.gov/29220075
https://pubmed.ncbi.nlm.nih.gov/29220075
Publikováno v:
PLoS Computational Biology, Vol 15, Iss 4, p e1006969 (2019)
PLoS Computational Biology
PLoS Computational Biology
Proteins are involved in almost all functions in a living cell, and functions of proteins are realized by their tertiary structures. Obtaining a global perspective of the variety and distribution of protein structures lays a foundation for our unders
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d9024372849a3280f6f5ad50d5f1edbb
https://doi.org/10.1371/journal.pcbi.1006969
https://doi.org/10.1371/journal.pcbi.1006969