Zobrazeno 1 - 10
of 51
pro vyhledávání: '"Xingjie Shi"'
Publikováno v:
Frontiers in Genetics, Vol 15 (2024)
Background: Cerebral aneurysms (CAs) are a significant cerebrovascular ailment with a multifaceted etiology influenced by various factors including heredity and environment. This study aimed to explore the possible link between different types of imm
Externí odkaz:
https://doaj.org/article/c387c07f95a9430b8d5821258dcf1a5b
Autor:
Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao, Xingjie Shi, Weiwei Zhai, Hongkai Ji, Joe Yeong, Jin Liu
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-18 (2023)
Abstract Spatially resolved transcriptomics involves a set of emerging technologies that enable the transcriptomic profiling of tissues with the physical location of expressions. Although a variety of methods have been developed for data integration,
Externí odkaz:
https://doaj.org/article/9abd87ac205140bb9a3046b91896c166
Autor:
Wei Liu, Xu Liao, Ziye Luo, Yi Yang, Mai Chan Lau, Yuling Jiao, Xingjie Shi, Weiwei Zhai, Hongkai Ji, Joe Yeong, Jin Liu
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-1 (2023)
Externí odkaz:
https://doaj.org/article/69af2794364246c492094a4c31a70915
Publikováno v:
Journal of Computational and Graphical Statistics. :1-11
The analysis of hierarchical interactions has long been a challenging problem due to the large number of candidate main effects and interaction effects, and the need for accommodating the “main effects, interactions” hierarchy. The two-stage anal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97ba2086c6d2c6b9e2888d09cbb0f382
https://doi.org/10.1080/10618600.2022.2152034
https://doi.org/10.1080/10618600.2022.2152034
Publikováno v:
The Econometrics Journal.
Summary Based on the smoothed partial rank (SPR) loss function, we propose a group LASSO penalized SPR estimator for the varying coefficient nonparametric transformation models, and derive its estimation and model selection consistencies. It not only
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e4e7fe33d966a16bfc82676d0a8a6062
https://doi.org/10.1093/ectj/utad007
https://doi.org/10.1093/ectj/utad007
In the analysis of both single-cell RNA sequencing (scRNA-seq) and spatially resolved transcriptomics (SRT) data, classifying cells/spots into cell/domain types is an essential analytic step for many secondary analyses. Most of the existing annotatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::11f1e429ae1e6cd8e62fb4507c92d000
https://doi.org/10.1101/2023.02.08.527590
https://doi.org/10.1101/2023.02.08.527590
Autor:
Jing Zhang, Xiao Zhang, Xingjie Shi, Yuqi Liu, Danqian Cheng, Qianwen Tian, Ning Lin, Wei Wei, Huaxun Wu
Primary Sjogren's syndrome (pSS) is a systemic autoimmune disease that causes dysfunction of secretory glands and the specific pathogenesis is still unknown. The CXCL9, 10, 11/CXCR3 axis and G protein-coupled receptor kinase 2 (GRK2) involved in many
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::034a1eeb68359e60c9e05f0df18fda70
https://doi.org/10.21203/rs.3.rs-2384219/v1
https://doi.org/10.21203/rs.3.rs-2384219/v1
An efficient and accurate annotation method for spatial transcriptomics datasets, with the capability to effectively leverage a large number of non-marker genes as well as “qualitative” information about marker genes without using a reference dat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4e66c809792580ef7684b7da83483623
Publikováno v:
Neuroreport. 33(11)
Traumatic brain injury (TBI) is characterized by neuronal loss and subsequent brain damage and can be accompanied by transient or permanent neurological dysfunction. The recovery of cognitive function after TBI is a challenge. This study aimed at inv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::603e12acf2616fa607e9ba25ca6aeff8
https://pubmed.ncbi.nlm.nih.gov/35775323
https://pubmed.ncbi.nlm.nih.gov/35775323
Publikováno v:
Nucleic acids research. 50(12)
Dimension reduction and (spatial) clustering is usually performed sequentially; however, the low-dimensional embeddings estimated in the dimension-reduction step may not be relevant to the class labels inferred in the clustering step. We therefore de
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::726187634e2e70a3a4d60058fd0b5019
https://pubmed.ncbi.nlm.nih.gov/35349708
https://pubmed.ncbi.nlm.nih.gov/35349708