Pneumococcal Capsular Switching: A Historical Perspective

Autor: Wyres, KL, Lambertsen, LM, Croucher, NJ, McGee, L, Von Gottberg, A, Linares, J, Jacobs, MR, Kristinsson, KG, Beall, BW, Klugman, KP, Parkhill, J, Hakenbeck, R, Bentley, SD, Brueggemann, AB

Publikováno v: The Journal of Infectious Diseases

Background . Changes in serotype prevalence among pneumococcal populations result from both serotype replacement and serotype (capsular) switching. Temporal changes in serotype distributions are well documented, but the contribution of capsular switc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::3c7723a6216bc34c3ef29fa2ee728bea
http://europepmc.org/articles/PMC3537446

Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae .

Autor: Tsang KK; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London WC1E 7HT, UK., Lam MMC; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria 3004, Australia., Wick RR; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria 3004, Australia.; Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia., Wyres KL; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria 3004, Australia., Bachman M; University of Michigan, Ann Arbor, USA., Baker S; University of Cambridge, Cambridge, UK., Barry K; University of Virginia, Charlottesville, USA., Brisse S; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Campino S; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London WC1E 7HT, UK., Chiaverini A; Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Teramo, Italy., Cirillo DM; Ospedale San Raffaele s.r.l. via olgettina, Milano, Italy., Clark T; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London WC1E 7HT, UK., Corander J; University of Oslo, Oslo, Norway., Corbella M; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy., Cornacchia A; Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Teramo, Italy., Cuénod A; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., D'Alterio N; Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Teramo, Italy., Di Marco F; Ospedale San Raffaele s.r.l. via olgettina, Milano, Italy., Donado-Godoy P; Centro de Investigación Tibaitatá de AGROSAVIA, Mosquera, Colombia., Egli A; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., Farzana R; Ineos-Oxford Institute for Antimicrobial Research, Department of Biology, University of Oxford, Oxford, UK., Feil EJ; The Milner Centre for Evolution, Department of Life Sciences, University of Bath, BA2 7AY, Bath, UK., Fostervold A; Department of Medical Microbiology, Stavanger University Hospital, Stavanger, Norway., Gorrie CL; Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia., Hassan B; Cardiff University, Cardiff, Wales, UK., Hetland MAK; Department of Medical Microbiology, Stavanger University Hospital, Stavanger, Norway., Hoa LNM; National Hospital for Tropical Diseases, Hanoi, Vietnam., Hoi LT; Hanoi Medical University, Hanoi, Vietnam., Howden B; Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia., Ikhimiukor OO; Department of Pharmaceutical Microbiology, University of Ibadan, Ibadan, Nigeria., Jenney AWJ; Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia., Kaspersen H; Norwegian Veterinary Institute, Ås, Norway., Khokhar F; University of Cambridge, Cambridge, UK., Leangapichart T; Norwegian Veterinary Institute, Ås, Norway., Ligowska-Marzęta M; Statens Serum Institut, Copenhagen, Denmark., Löhr IH; Department of Medical Microbiology, Stavanger University Hospital, Stavanger, Norway., Long SW; Houston Methodist, Weill Cornell Medical College, New York, USA., Mathers AJ; University of Virginia, Charlottesville, USA., McArthur AG; Michael G. DeGroote Institute for Infectious Disease Research and Department of Biochemistry & Biomedical Sciences, McMaster University, Hamilton, Canada., Nagaraj G; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Oaikhena AO; Department of Pharmaceutical Microbiology, University of Ibadan, Ibadan, Nigeria., Okeke IN; Department of Pharmaceutical Microbiology, University of Ibadan, Ibadan, Nigeria., Perdigão J; University of Lisbon, Lisbon, Portugal., Parikh H; University of Virginia, Charlottesville, USA., Pham MH; Wellcome Sanger Institute, Hinxton, UK., Pomilio F; Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Teramo, Italy., Raffelsberger N; Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway., Rakotondrasoa A; Institut Pasteur de Bangui, Bangui, Central African Republic., Kumar KLR; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Roberts LW; Queensland University of Technology, Brisbane, Australia., Rodrigues C; Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France., Samuelsen Ø; Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway.; Department of Pharmacy, Faculty of Health Sciences, UiT The Arctic University of Norway, Tromsø, Norway., Sands K; Ineos-Oxford Institute for Antimicrobial Research, Department of Biology, University of Oxford, Oxford, UK., Sassera D; Microbiology and Virology Unit, Fondazione IRCCS Policlinico San Matteo, Pavia, Italy.; Department of Biology and Biotechnology, University of Pavia, Pavia, Italy., Seth-Smith H; Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland., Shamanna V; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Sherry NL; Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, University of Melbourne, Melbourne, Victoria, Australia., Sia S; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Spadar A; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London WC1E 7HT, UK., Stoesser N; Nuffield Department of Medicine, University of Oxford, Oxford, UK., Sunde M; Norwegian Veterinary Institute, Ås, Norway., Sundsfjord A; Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway.; Department of Medical Biology, Faculty of Health Sciences, UiT The Arctic University of Norway, Tromsø, Norway., Thach PN; National Hospital for Tropical Diseases, Hanoi, Vietnam., Thomson NR; Wellcome Sanger Institute, Hinxton, UK., Thorpe HA; University of Oslo, Oslo, Norway., Torok ME; University of Cambridge, Cambridge, UK., Trang VD; National Hospital for Tropical Diseases, Hanoi, Vietnam., Trung NV; Hanoi Medical University, Hanoi, Vietnam., Vornhagen J; Indiana University School of Medicine, Indianapolis, USA., Walsh T; Ineos-Oxford Institute for Antimicrobial Research, Department of Biology, University of Oxford, Oxford, UK., Warne B; University of Cambridge, Cambridge, UK., Wilson H; PHG Foundation, University of Cambridge, Cambridge, UK., Wright GD; Michael G. DeGroote Institute for Infectious Disease Research and Department of Biochemistry & Biomedical Sciences, McMaster University, Hamilton, Canada., Holt KE; Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London WC1E 7HT, UK.; Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria 3004, Australia., KlebNET-Gsp Amr Genotype-Phenotype Group

Publikováno v: Microbial genomics [Microb Genom] 2024 Oct; Vol. 10 (10).

Molecular characterization and descriptive analysis of carbapenemase-producing Gram-negative rod infections in Bogota, Colombia.

Autor: Ibáñez-Prada ED; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia.; Critical Care Department, Clínica Universidad de La Sabana, Chía, Colombia., Bustos IG; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia.; Critical Care Department, Clínica Universidad de La Sabana, Chía, Colombia., Gamboa-Silva E; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia., Josa DF; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia.; Microbiology Department, Fundación Clínica Shaio, Bogota, Colombia., Mendez L; Critical Care Department, Clínica Universidad de La Sabana, Chía, Colombia., Fuentes YV; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia., Serrano-Mayorga CC; Critical Care Department, Clínica Universidad de La Sabana, Chía, Colombia., Baron O; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia., Ruiz-Cuartas A; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia., Silva E; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia.; Microbiology Department, Fundación Clínica Shaio, Bogota, Colombia., Judd LM; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria, Australia., Harshegyi T; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria, Australia., Africano HF; Critical Care Department, Clínica Universidad de La Sabana, Chía, Colombia., Urrego-Reyes J; Global Medical Scientific Affairs, MSD Colombia, Bogota, Colombia., Beltran CC; Global Medical Scientific Affairs, MSD Colombia, Bogota, Colombia., Medina S; Global Medical Scientific Affairs, MSD Colombia, Bogota, Colombia., Leal R; Microbiology Department, Fundación Clínica Shaio, Bogota, Colombia., Stewardson AJ; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria, Australia., Wyres KL; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria, Australia., Hawkey J; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria, Australia., Reyes LF; Unisabana Center for Translational Science, School of Medicine, Universidad de la Sabana, Chía, Colombia.; Critical Care Department, Clínica Universidad de La Sabana, Chía, Colombia.; Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2024 Jun 04; Vol. 12 (6), pp. e0171423. Date of Electronic Publication: 2024 Apr 17.

A validated pangenome-scale metabolic model for the Klebsiella pneumoniae species complex.

Autor: Cooper HB; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3004, Australia.; Centre to Impact AMR, Monash University, Clayton, Victoria 3800, Australia., Vezina B; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3004, Australia.; Centre to Impact AMR, Monash University, Clayton, Victoria 3800, Australia., Hawkey J; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3004, Australia., Passet V; Institut Pasteur, Université de Paris, Biodiversity and Epidemiology of Bacterial Pathogens, 75015 Paris, France., López-Fernández S; Institut Pasteur, Université de Paris, Biodiversity and Epidemiology of Bacterial Pathogens, 75015 Paris, France., Monk JM; Department of Bioengineering, University of California, San Diego, California 92093, USA., Brisse S; Institut Pasteur, Université de Paris, Biodiversity and Epidemiology of Bacterial Pathogens, 75015 Paris, France., Holt KE; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3004, Australia.; Department of Infection Biology, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK., Wyres KL; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3004, Australia.; Centre to Impact AMR, Monash University, Clayton, Victoria 3800, Australia.

Publikováno v: Microbial genomics [Microb Genom] 2024 Feb; Vol. 10 (2).

Bactabolize is a tool for high-throughput generation of bacterial strain-specific metabolic models.

Autor: Vezina B; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia., Watts SC; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia., Hawkey J; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia., Cooper HB; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia., Judd LM; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia., Jenney AWJ; Microbiology Unit, Alfred Health, Melbourne, Australia., Monk JM; Department of Bioengineering, University of California, San Diego, San Diego, United States., Holt KE; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.; Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, United Kingdom., Wyres KL; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.

Publikováno v: ELife [Elife] 2023 Oct 10; Vol. 12. Date of Electronic Publication: 2023 Oct 10.