Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Winnie Uritboonthai"'
Autor:
Martin Giera, Aries Aisporna, Winnie Uritboonthai, Linh Hoang, Rico J E Derks, Kara M Joseph, Erin S Baker, Gary Siuzdak
Publikováno v:
Molecular Systems Biology, Vol 20, Iss 11, Pp 1153-1155 (2024)
In this Correspondence, G. Siuzdak and colleagues present XCMS-METLIN, an extensive resource for metabolomics, lipidomics, and chemical analysis.
Externí odkaz:
https://doaj.org/article/16f66ba6666d4a4bb46ef692efafda5f
Autor:
Xavier Domingo-Almenara, Carlos Guijas, Elizabeth Billings, J. Rafael Montenegro-Burke, Winnie Uritboonthai, Aries E. Aisporna, Emily Chen, H. Paul Benton, Gary Siuzdak
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-9 (2019)
The use of machine learning for identifying small molecules through their retention time’s predictions has been challenging so far. Here the authors combine a large database of liquid chromatography retention time with a deep learning approach to e
Externí odkaz:
https://doaj.org/article/5d98ceacccd144fe87ea451c880b8095
Autor:
Emily I. Chen, J. Rafael Montenegro-Burke, Aries E. Aisporna, Elizabeth Billings, H. Paul Benton, Winnie Uritboonthai, Gary Siuzdak, Xavier Domingo-Almenara, Carlos Guijas
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-9 (2019)
Nature Communications
Nature Communications
Machine learning has been extensively applied in small molecule analysis to predict a wide range of molecular properties and processes including mass spectrometry fragmentation or chromatographic retention time. However, current approaches for retent
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f91b0260a7e01ffd2d50a6c365c3d7d
https://doi.org/10.1038/s41467-019-13680-7
https://doi.org/10.1038/s41467-019-13680-7
Autor:
J. Rafael Montenegro-Burke, Amelia Palermo, Gerrit Hermann, Gunda Koellensperger, H. Paul Benton, Gary Siuzdak, Tao Huan, Carlos Guijas, Benedikt Warth, Winnie Uritboonthai, Mary E. Spilker, Aries E. Aisporna, Xavier Domingo-Almenara, Dennis W. Wolan
METLIN originated as a database to characterize known metabolites and has since expanded into a technology platform for the identification of known and unknown metabolites and other chemical entities. Through this effort it has become a comprehensive
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::276bc9f99dce1b2f4e9c457bfabf15f7
https://europepmc.org/articles/PMC5933435/
https://europepmc.org/articles/PMC5933435/
Autor:
Mingliang Fang, Gary J. Patti, Julijana Ivanisevic, Linh Hoang, Michael E. Kurczy, Caroline H. Johnson, H. Paul Benton, Gary Siuzdak, Winnie Uritboonthai
Publikováno v:
Analytical Chemistry
Thermal processes are widely used in small molecule chemical analysis and metabolomics for derivatization, vaporization, chromatography, and ionization, especially in gas chromatography mass spectrometry (GC/MS). In this study the effect of heating w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b5237ca7240f3501b449fd6cb44dbdc
http://europepmc.org/articles/PMC4633772
http://europepmc.org/articles/PMC4633772
Autor:
Gary J. Patti, Duane Rinehart, Julijana Ivanisevic, Michael E. Kurczy, Matthew Hicks, Caroline H. Johnson, H. Paul Benton, Mary E. Spilker, Mingliang Fang, Linh Hoang, Ralf Tautenhahn, Winnie Uritboonthai, Gary Siuzdak, Lisa Mellander, Anthony Aldebot
Publikováno v:
Bioinformatics. 31:3721-3724
Motivation: Metabolite databases provide a unique window into metabolome research allowing the most commonly searched biomarkers to be catalogued. Omic scale metabolite profiling, or metabolomics, is finding increased utility in biomarker discovery l
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b1f25e655eb104c40e56697ad20226d4
https://doi.org/10.1093/bioinformatics/btv475
https://doi.org/10.1093/bioinformatics/btv475
Autor:
Winnie Uritboonthai, Cynthia L. Sears, Kevin Cho, Robert A. Casero, Christine M. Dejea, James R. White, Caroline H. Johnson, Elizabeth C. Wick, Drew M. Pardoll, Elizabeth M. Hechenbleikner, Linh Hoang, Gary Siuzdak, David Edler, Julijana Ivanisevic, Brunhilde H. Felding, Gary J. Patti, Antonio F. Santidrian, Laura H. Goetz
Publikováno v:
Cell Metabolism. 21:891-897
Bacterial biofilms in the colon alter the host tissue microenvironment. A role for biofilms in colon cancer metabolism has been suggested but to date has not been evaluated. Using metabolomics, we investigated the metabolic influence that microbial b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc6343ea1e30e31356639457b7523365
https://doi.org/10.1016/j.cmet.2015.04.011
https://doi.org/10.1016/j.cmet.2015.04.011
Autor:
Brian Hilmers, J. Rafael Montenegro-Burke, Duane Rinehart, Mingliang Fang, Scott Spangler, Antony J. Williams, Gary Siuzdak, Susan D. Richardson, Winnie Uritboonthai, Erica M. Forsberg, Aries E. Aisporna, Caroline H. Johnson, H. Paul Benton, Ana Granados, Linh Hoang, Tao Huan, Benedikt Warth, Richard L. Martin, Xavier Domingo-Almenara
Publikováno v:
Analytical chemistry. 89(21)
Concurrent exposure to a wide variety of xenobiotics and their combined toxic effects can play a pivotal role in health and disease, yet are largely unexplored. Investigating the totality of these exposures, i.e., the "exposome", and their specific b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c3f4bcdca55508b845f5d6ef31c2ab9
https://pubmed.ncbi.nlm.nih.gov/28945073
https://pubmed.ncbi.nlm.nih.gov/28945073
Autor:
Brian Hilmers, Winnie Uritboonthai, Xavier Domingo-Almenara, Richard L. Martin, Linh Hoang, Tao Huan, Gary Siuzdak, J. Rafael Montenegro-Burke, Caroline H. Johnson, Aries E. Aisporna, Mingliang Fang, Benedikt Warth, Antony J. Williams, H. Paul Benton, Susan D. Richardson, Erica M. Forsberg, Ana Granados, Scott Spangler, Duane Rinehart
Concurrent exposure to a wide variety of xenobiotics and their combined toxic effects can play a pivotal role in health and disease, yet are largely unexplored. Investigating the totality of these exposures, i.e. theexposome, and their specific biolo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cc55d43c4f120aa9e273476e5979814c
https://doi.org/10.1101/145722
https://doi.org/10.1101/145722
Autor:
Anders Nordström, Stephen L. Golledge, Junefredo V. Apon, Oscar Yanes, Gary Siuzdak, Winnie Uritboonthai, Dena Marrinucci, Michael T. Northen, Trent R. Northen
Publikováno v:
Nature. 449:1033-1036
The ability of mass spectrometry to generate intact biomolecular ions efficiently in the gas phase has led to its widespread application in metabolomics, proteomics, biological imaging, biomarker discovery and clinical assays (namely neonatal screens
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::71d6844746e54feeef63a85a137c4e38
https://doi.org/10.1038/nature06195
https://doi.org/10.1038/nature06195