Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity.

Autor: Liu H; Department of Biostatistics, University of Washington, Seattle, WA, 98195, USA.; Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA., Ling W; Division of Biostatistics, Department of Population Health Sciences, Weill Cornell Medicine, New York, NY, 10065, USA., Hua X; Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA., Moon JY; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, 10461, USA., Williams-Nguyen JS; Institute for Research and Education to Advance Community Health, Washington State University, Seattle, WA, 98101, USA., Zhan X; Department of Biostatistics and Beijing International Center for Mathematical Research, Peking University, Beijing, 100191, China., Plantinga AM; Department of Mathematics and Statistics, Williams College, Williamstown, MA, 01267, USA., Zhao N; Department of Biostatistics, Johns Hopkins University, Baltimore, MD, 21205, USA., Zhang A; Department of Biostatistics, University of Washington, Seattle, WA, 98195, USA.; Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA., Knight R; Departments of Pediatrics, Computer Science & Engineering, and Bioengineering; Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, 92093, USA., Qi Q; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, 10461, USA., Burk RD; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.; Departments of Pediatrics; Microbiology & Immunology; and, Obstetrics, Gynecology & Women's Health, Albert Einstein College of Medicine, Bronx, NY, 10461, USA., Kaplan RC; Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA.; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, 10461, USA., Wu MC; Department of Biostatistics, University of Washington, Seattle, WA, 98195, USA. mcwu@fredhutch.org.; Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, WA, 98109, USA. mcwu@fredhutch.org.

Publikováno v: Microbiome [Microbiome] 2023 Apr 20; Vol. 11 (1), pp. 80. Date of Electronic Publication: 2023 Apr 20.

Dietary factors, gut microbiota, and serum trimethylamine-N-oxide associated with cardiovascular disease in the Hispanic Community Health Study/Study of Latinos.

Autor: Mei Z; State Key Laboratory of Genetic Engineering, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, USA., Chen GC; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, USA., Wang Z; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, USA., Usyk M; Department of Pediatrics, Albert Einstein College of Medicine, Bronx, NY, USA., Yu B; Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, The University of Texas Health Science Center at Houston, Houston, TX, USA., Baeza YV; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Humphrey G; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Benitez RS; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Li J; Department of Nutrition and Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, USA., Williams-Nguyen JS; Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Daviglus ML; Institute of Minority Health Research, University of Illinois College of Medicine, Chicago, IL, USA., Hou L; Institute for Public Health and Medicine, Northwestern University, Chicago, IL, USA., Cai J; Department of Biostatistics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Zheng Y; State Key Laboratory of Genetic Engineering, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.; Ministry of Education Key Laboratory of Public Health Safety, School of Public Health, Fudan University, Shanghai, China., Knight R; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, Jacobs School of Engineering, and Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Burk RD; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, USA.; Department of Pediatrics, Albert Einstein College of Medicine, Bronx, NY, USA.; Department of Microbiology and Immunology, and Department of Obstetrics, Gynecology and Women's Health, Albert Einstein College of Medicine, Bronx, NY, USA., Boerwinkle E; Department of Epidemiology, Human Genetics, and Environmental Sciences, School of Public Health, The University of Texas Health Science Center at Houston, Houston, TX, USA., Kaplan RC; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, USA.; Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Qi Q; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, Bronx, NY, USA.; Department of Nutrition and Department of Epidemiology, Harvard TH Chan School of Public Health, Boston, MA, USA.

Publikováno v: The American journal of clinical nutrition [Am J Clin Nutr] 2021 Jun 01; Vol. 113 (6), pp. 1503-1514.

Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity.

Autor: Kaplan RC; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA. robert.kaplan@einstein.yu.edu.; Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA. robert.kaplan@einstein.yu.edu., Wang Z; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA., Usyk M; Department of Pediatrics, Albert Einstein College of Medicine, Bronx, NY, USA., Sotres-Alvarez D; Department of Biostatistics, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, USA., Daviglus ML; Institute for Minority Health Research, University of Illinois at Chicago College of Medicine, Chicago, IL, USA., Schneiderman N; Department of Psychology, University of Miami, Miami, FL, USA., Talavera GA; Division of Health Promotion and Behavioral Science, San Diego State University, San Diego, CA, USA., Gellman MD; Department of Psychology, University of Miami, Miami, FL, USA., Thyagarajan B; Division of Molecular Pathology and Genomics, University of Minnesota, Minneapolis, MN, USA., Moon JY; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA., Vázquez-Baeza Y; Jacobs School of Engineering, University of California, San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Williams-Nguyen JS; Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA., Wu MC; Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA, USA., North KE; Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC, USA., Shaffer J; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Sollecito CC; Department of Pediatrics, Albert Einstein College of Medicine, Bronx, NY, USA., Qi Q; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA., Isasi CR; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA., Wang T; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA., Knight R; Center for Microbiome Innovation, University of California, San Diego, La Jolla, CA, USA.; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA.; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA., Burk RD; Department of Epidemiology and Population Health, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA.; Department of Pediatrics, Albert Einstein College of Medicine, Bronx, NY, USA.; Department of Microbiology & Immunology, Albert Einstein College of Medicine, Bronx, NY, USA.

Publikováno v: Genome biology [Genome Biol] 2020 Feb 25; Vol. 21 (1), pp. 50. Date of Electronic Publication: 2020 Feb 25.

Effectiveness of Direct-Acting Antiviral Therapy in Patients With Human Immunodeficiency Virus-Hepatitis C Virus Coinfection in Routine Clinical Care: A Multicenter Study.

Autor: Kim HN; Department of Medicine, University of Washington, Seattle., Nance RM; Department of Medicine, University of Washington, Seattle., Williams-Nguyen JS; Department of Epidemiology, University of Washington, Seattle., Chris Delaney JA; Department of Epidemiology, University of Washington, Seattle., Crane HM; Department of Medicine, University of Washington, Seattle., Cachay ER; Department of Medicine, University of California, San Diego., Martin J; Department of Medicine, University of California, San Francisco., Mathews WC; Department of Medicine, University of California, San Diego., Chander G; Department of Medicine, Johns Hopkins University, Baltimore, Maryland., Franco R; Department of Medicine, University of Alabama, Birmingham., Hurt CB; Institute for Global Health & Infectious Diseases, University of North Carolina, Chapel Hill., Geng EH; Department of Medicine, University of California, San Francisco., Rodriguez B; Department of Medicine, Case Western University, Cleveland, Ohio., Moore RD; Department of Medicine, Johns Hopkins University, Baltimore, Maryland., Saag MS; Department of Medicine, University of Alabama, Birmingham., Kitahata MM; Department of Medicine, University of Washington, Seattle.

Publikováno v: Open forum infectious diseases [Open Forum Infect Dis] 2019 Mar 23; Vol. 6 (4), pp. ofz100. Date of Electronic Publication: 2019 Mar 23 (Print Publication: 2019).