Zobrazeno 1 - 10
of 33
pro vyhledávání: '"William Klimke"'
Autor:
Rebecca L. Lindsey, Arjun Prasad, Michael Feldgarden, Narjol Gonzalez-Escalona, Curtis Kapsak, William Klimke, Angela Melton-Celsa, Peyton Smith, Alexandre Souvorov, Jenny Truong, Flemming Scheutz
Publikováno v:
Microorganisms, Vol 11, Iss 10, p 2561 (2023)
The sharing of genome sequences in online data repositories allows for large scale analyses of specific genes or gene families. This can result in the detection of novel gene subtypes as well as the development of improved detection methods. Here, we
Externí odkaz:
https://doaj.org/article/509e4e6726684d199d0af2b7540c48f6
Autor:
Michael Feldgarden, Vyacheslav Brover, Narjol Gonzalez-Escalona, Jonathan G. Frye, Julie Haendiges, Daniel H. Haft, Maria Hoffmann, James B. Pettengill, Arjun B. Prasad, Glenn E. Tillman, Gregory H. Tyson, William Klimke
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-9 (2021)
Abstract Antimicrobial resistance (AMR) is a significant public health threat. With the rise of affordable whole genome sequencing, in silico approaches to assessing AMR gene content can be used to detect known resistance mechanisms and potentially i
Externí odkaz:
https://doaj.org/article/a74a376a5af442ffaa166193f704c31e
Autor:
Heike Sichtig, Timothy Minogue, Yi Yan, Christopher Stefan, Adrienne Hall, Luke Tallon, Lisa Sadzewicz, Suvarna Nadendla, William Klimke, Eneida Hatcher, Martin Shumway, Dayanara Lebron Aldea, Jonathan Allen, Jeffrey Koehler, Tom Slezak, Stephen Lovell, Randal Schoepp, Uwe Scherf
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-13 (2019)
To be able to use infectious disease next generation sequencing as a diagnostic tool, appropriate reference datasets are required. Here, Sichtig et al. describe FDA-ARGOS, a reference database for high-quality microbial reference genomes, and demonst
Externí odkaz:
https://doaj.org/article/a0233f5c8af641e8ad4b88571f30d00f
Autor:
Qiandong Zeng, William Klimke, Peter Sterk, Susmita Shrivastava, Ramana Madupu, Richard H. Scheuermann, Seth Schobel, Donald Seto, Yiming Bao, Carla Kuiken, Elliot J. Lefkowitz, Philippe Le Mercier, Raphael Leplae, Tatiana Tatusova, James Rodney Brister
Publikováno v:
Viruses, Vol 2, Iss 10, Pp 2258-2268 (2010)
Improvements in DNA sequencing technologies portend a new era in virology and could possibly lead to a giant leap in our understanding of viral evolution and ecology. Yet, as viral genome sequences begin to fill the world’s biological databases, it
Externí odkaz:
https://doaj.org/article/c06d55185fce4ee0a7114b2439124117
Autor:
Brian P Anton, Yi-Chien Chang, Peter Brown, Han-Pil Choi, Lina L Faller, Jyotsna Guleria, Zhenjun Hu, Niels Klitgord, Ami Levy-Moonshine, Almaz Maksad, Varun Mazumdar, Mark McGettrick, Lais Osmani, Revonda Pokrzywa, John Rachlin, Rajeswari Swaminathan, Benjamin Allen, Genevieve Housman, Caitlin Monahan, Krista Rochussen, Kevin Tao, Ashok S Bhagwat, Steven E Brenner, Linda Columbus, Valérie de Crécy-Lagard, Donald Ferguson, Alexey Fomenkov, Giovanni Gadda, Richard D Morgan, Andrei L Osterman, Dmitry A Rodionov, Irina A Rodionova, Kenneth E Rudd, Dieter Söll, James Spain, Shuang-Yong Xu, Alex Bateman, Robert M Blumenthal, J Martin Bollinger, Woo-Suk Chang, Manuel Ferrer, Iddo Friedberg, Michael Y Galperin, Julien Gobeill, Daniel Haft, John Hunt, Peter Karp, William Klimke, Carsten Krebs, Dana Macelis, Ramana Madupu, Maria J Martin, Jeffrey H Miller, Claire O'Donovan, Bernhard Palsson, Patrick Ruch, Aaron Setterdahl, Granger Sutton, John Tate, Alexander Yakunin, Dmitri Tchigvintsev, Germán Plata, Jie Hu, Russell Greiner, David Horn, Kimmen Sjölander, Steven L Salzberg, Dennis Vitkup, Stanley Letovsky, Daniel Segrè, Charles DeLisi, Richard J Roberts, Martin Steffen, Simon Kasif
Publikováno v:
PLoS Biology, Vol 11, Iss 8, p e1001638 (2013)
Externí odkaz:
https://doaj.org/article/08400167d9dc4fa29d1dc69cd0f6756f
Autor:
Eric L. Stevens, Heather A. Carleton, Jennifer Beal, Glenn E. Tillman, Rebecca L. Lindsey, A.C. Lauer, Arthur Pightling, Karen G. Jarvis, Andrea Ottesen, Padmini Ramachandran, Leslie Hintz, Lee S. Katz, Jason P. Folster, Jean M. Whichard, Eija Trees, Ruth E. Timme, Patrick Mcdermott, Beverly Wolpert, Michael Bazaco, Shaohua Zhao, Sabina Lindley, Beau B. Bruce, Patricia M. Griffin, Eric Brown, Marc Allard, Sandra Tallent, Kari Irvin, Maria Hoffmann, Matt Wise, Robert Tauxe, Peter Gerner-Smidt, Mustafa Simmons, Bonnie Kissler, Stephanie Defibaugh-Chavez, William Klimke, Richa Agarwala, James Lindsay, Kimberly Cook, Suelee Robbe Austerman, David Goldman, Sherri Mcgarry, Kis Robertson Hale, Uday Dessai, Steven M. Musser, Chris Braden
Publikováno v:
Journal of Food Protection. 85:755-772
This multiagency report developed by the Interagency Collaboration for Genomics for Food and Feed Safety provides an overview of the use of and transition to whole genome sequencing (WGS) technology for detection and characterization of pathogens tra
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::59af78c3c211d2dd3d5c2a32806b172d
https://doi.org/10.4315/jfp-21-437
https://doi.org/10.4315/jfp-21-437
Autor:
Eric W Sayers, Evan E Bolton, J Rodney Brister, Kathi Canese, Jessica Chan, Donald C Comeau, Catherine M Farrell, Michael Feldgarden, Anna M Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L Madden, Adriana Malheiro, Aron Marchler-Bauer, Terence D Murphy, Lon Phan, Shashikant Pujar, Sanjida H Rangwala, Valerie A Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W Trawick, Kim D Pruitt, Stephen T Sherry
Publikováno v:
Nucleic Acids Res
The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a57078e0f67eb3b452a111fba83e1926
https://europepmc.org/articles/PMC9825438/
https://europepmc.org/articles/PMC9825438/
Autor:
Michael Feldgarden, Vyacheslav Brover, Boris Fedorov, Daniel H. Haft, Arjun B. Prasad, William Klimke
Publikováno v:
Microbial Genomics. 8
Antimicrobial resistance (AMR) is a significant public health threat. Low-cost whole-genome sequencing, which is often used in surveillance programmes, provides an opportunity to assess AMR gene content in these genomes using in silico approaches. A
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::070188c8a03887f7979b44ffd777a80d
https://doi.org/10.1099/mgen.0.000832
https://doi.org/10.1099/mgen.0.000832
Autor:
Patricia A. Bradford, Robert A. Bonomo, Karen Bush, Alessandra Carattoli, Michael Feldgarden, Daniel H. Haft, Yoshikazu Ishii, George A. Jacoby, William Klimke, Timothy Palzkill, Laurent Poirel, Gian Maria Rossolini, Pranita D. Tamma, Cesar A. Arias
Publikováno v:
Antimicrobial Agents and Chemotherapy. 66
Assigning names to β-lactamase variants has been inconsistent and has led to confusion in the published literature. The common availability of whole genome sequencing has resulted in an exponential growth in the number of new β-lactamase genes. In
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60bee5056c483dde5560da810abd512c
https://doi.org/10.1128/aac.00333-22
https://doi.org/10.1128/aac.00333-22
Autor:
Narjol Gonzalez-Escalona, Vyacheslav Brover, James B. Pettengill, Glenn E. Tillman, Gregory H. Tyson, Jonathan G. Frye, Julie Haendiges, Maria Hoffmann, William Klimke, Daniel H. Haft, Arjun B. Prasad, Michael Feldgarden
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-9 (2021)
Scientific Reports
Scientific Reports
Antimicrobial resistance (AMR) is a significant public health threat. With the rise of affordable whole genome sequencing, in silico approaches to assessing AMR gene content can be used to detect known resistance mechanisms and potentially identify n
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a88d580b138bb8fab0e3b22acd9bc7de
https://doi.org/10.1038/s41598-021-91456-0
https://doi.org/10.1038/s41598-021-91456-0