Výsledky vyhledávání - "William Digan"

A Multi-Omics Common Data Model for Primary Immunodeficiencies

Autor: Mélanie, Buy, William, Digan, Xiaoyi, Chen, Julien, Husson, Mickael, Ménager, Frédéric, Rieux-Laucat, Nicolas, Garcelon

Publikováno v: Studies in Health Technology and Informatics
Studies in Health Technology and Informatics, 2022, Studies in Health Technology and Informatics, 290, pp.56-60. ⟨10.3233/SHTI220031⟩

International audience; Primary Immunodeficiencies (PIDs) are associated with more than 400 rare monogenic diseases affecting various biological functions (e.g., development, regulation of the immune response) with a heterogeneous clinical expression

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::cd72d595f7357fd2b544b46f43df89b9
https://hal.science/hal-04032071

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viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome

Autor: Maxime Wack, David Veyer, Camille Peneau, Sonia Lameiras, William Digan, Alain Nicolas, Jessica Zucman-Rossi, Sandrine Imbeaud, Anita Burgun, Hélène Péré, Bastien Rance

Publikováno v: Challenges of Trustable AI and Added-Value on Health
Challenges of Trustable AI and Added-Value on Health, 294, IOS Press, pp.834-838, 2022, Studies in Health Technology and Informatics, ⟨10.3233/SHTI220602⟩

International audience; Introduction: The implication of viruses in human cancers, as well as the emergence of next generation sequencing has permitted to investigate further their role and pathophysiology in the development of this disease. One such

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c509341b790a1a1d796c50b9780943f3
https://doi.org/10.3233/shti220602

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French FastContext: a Publicly Accessible System for Detecting Negation, Temporality and Experiencer in French Clinical Notes

Autor: Mehdi Mirzapour, Amine Abdaoui, Andon Tchechmedjiev, William Digan, Sandra Bringay, Clement Jonquet

Publikováno v: Journal of Biomedical Informatics
Journal of Biomedical Informatics, 2021, 117, pp.103733. ⟨10.1016/j.jbi.2021.103733⟩
Journal of Biomedical Informatics, Elsevier, 2021, 117, pp.103733. ⟨10.1016/j.jbi.2021.103733⟩

International audience; The context of medical conditions is an important feature to consider when processing clinical narratives. NegEx and its extension ConText became the most well-known rule-based systems that allow determining whether a medical

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6db0b2af46fd552c9ac557b4d9bfc5e3
https://hal.mines-ales.fr/hal-03184001

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Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites

Autor: Bastien Rance, David Baudoin, Maxime Wack, Antoine Neuraz, William Digan, Aurélie Névéol, Anita Burgun

Publikováno v: Journal of the American Medical Informatics Association
Journal of the American Medical Informatics Association, 2020, ⟨10.1093/jamia/ocaa261⟩
Journal of the American Medical Informatics Association, 2021, 28 (3), pp.504-515. ⟨10.1093/jamia/ocaa261⟩
Journal of the American Medical Informatics Association, BMJ Publishing Group, 2020, ⟨10.1093/jamia/ocaa261⟩
Journal of the American Medical Informatics Association : JAMIA

Background The increasing complexity of data streams and computational processes in modern clinical health information systems makes reproducibility challenging. Clinical natural language processing (NLP) pipelines are routinely leveraged for the sec

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7de99d42f42ea54e7160baa85596e6d1
https://hal.science/hal-03118455/document

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PGxCorpus, a manually annotated corpus for pharmacogenomics

Autor: Kevin Dalleau, Joël Legrand, Adrien Coulet, Nadine Petitpain, Malika Smaïl-Tabbone, Romain Gogdemir, Yannick Toussaint, William Digan, Cédric Bousquet, Marie-Dominique Devignes, Patrice Ringot, Ndeye-Coumba Ndiaye, Chia-Ju Lee

Publikováno v: Scientific Data
Scientific Data, Nature Publishing Group, 2020, 7 (3), ⟨10.1038/s41597-019-0342-9⟩
Scientific Data, Vol 7, Iss 1, Pp 1-13 (2020)
Scientific Data, 2020, 7, pp.3. ⟨10.1038/s41597-019-0342-9⟩

Pharmacogenomics (PGx) studies how individual gene variations impact drug response phenotypes, which makes PGx-related knowledge a key component towards precision medicine. A significant part of the state-of-the-art knowledge in PGx is accumulated in

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a17266e34c522d1ca42c7f80478dd151

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Validity of Targeted Next-Generation Sequencing in Routine Care for Identifying Clinically Relevant Molecular Profiles in Non–Small-Cell Lung Cancer

Autor: Pierre Laurent-Puig, Véronique Giraudet, Alice Guyard, Anne Tallet, Françoise Le Pimpec-Barthes, Etienne Giroux-Leprieur, William Digan, Catherine Julié, Bastien Rance, Hélène Blons, Jean Pastre, Antoine Legras, Alain Cazier, Véronique Duchatelle, Nicolas Pécuchet, Stéphane Jouveshomme, Laure Gibault, Elizabeth Fabre, Marc Barritault

Publikováno v: The Journal of Molecular Diagnostics. 20:550-564

Theranostic assays are based on single-gene testing, but the ability of next-generation sequencing (NGS) to interrogate numerous genetic alterations will progressively replace single-gene assays. Although NGS was evaluated to screen for theranostic m

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::7d519bf203a65848b34c4b8b601aceaf
https://doi.org/10.1016/j.jmoldx.2018.04.002

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Traitement automatique de la langue pour une réponse rapide dans le cadre d’une maladie émergente : exemple de la COVID-19

Autor: Antoine Neuraz, Ivan Lerner, Nicolas Garcelon, Anita Burgun, Rosy Tsopra, D. Baudoin, Kevin Bretonnel Cohen, A. Rosier, William Digan, Bastien Rance

Publikováno v: Revue D'Epidemiologie et De Sante Publique

Introduction Une maladie emergente pose des problemes specifiques pour les outils informatiques. L’informatique biomedicale repose en grande partie sur les donnees structurees qui requierent l’existence de donnees ou de modeles de connaissances.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56c06ef7feb15976e6c23ac84072a567
http://europepmc.org/articles/PMC8138910

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Evaluating the Impact of Text Duplications on a Corpus of More than 600,000 Clinical Narratives in a French Hospital

Autor: William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, Bastien Rance

Publikováno v: medinfo 2019
medinfo 2019, Aug 2019, Lyon, France
HAL

International audience; A significant part of medical knowledge is stored as unstructured free text. However, Clinical narratives are known to contains duplicated sections due to clinicians’ copy/paste parts of a former report into a new one. In th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::239a1ef466fe636bad705e2abb1ddc40
https://pubmed.ncbi.nlm.nih.gov/31437894

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Validity of Targeted Next-Generation Sequencing in Routine Care for Identifying Clinically Relevant Molecular Profiles in Non-Small-Cell Lung Cancer: Results of a 2-Year Experience on 1343 Samples

Autor: Antoine, Legras, Marc, Barritault, Anne, Tallet, Elizabeth, Fabre, Alice, Guyard, Bastien, Rance, William, Digan, Nicolas, Pecuchet, Etienne, Giroux-Leprieur, Catherine, Julie, Stéphane, Jouveshomme, Véronique, Duchatelle, Véronique, Giraudet, Laure, Gibault, Alain, Cazier, Jean, Pastre, Françoise, Le Pimpec-Barthes, Pierre, Laurent-Puig, Hélène, Blons

Publikováno v: The Journal of molecular diagnostics : JMD. 20(4)

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::cee21afa6ebcd8021d619c7166b73304
https://pubmed.ncbi.nlm.nih.gov/29787863

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