Zobrazeno 1 - 10
of 23
pro vyhledávání: '"William Andreopoulos"'
Autor:
Jeffrey J. Czajka, Yichao Han, Joonhoon Kim, Stephen J. Mondo, Beth A. Hofstad, AnaLaura Robles, Sajeet Haridas, Robert Riley, Kurt LaButti, Jasmyn Pangilinan, William Andreopoulos, Anna Lipzen, Juying Yan, Mei Wang, Vivian Ng, Igor V. Grigoriev, Joseph W. Spatafora, Jon K. Magnuson, Scott E. Baker, Kyle R. Pomraning
Publikováno v:
Frontiers in Bioengineering and Biotechnology, Vol 12 (2024)
The Lipomyces clade contains oleaginous yeast species with advantageous metabolic features for biochemical and biofuel production. Limited knowledge about the metabolic networks of the species and limited tools for genetic engineering have led to a r
Externí odkaz:
https://doaj.org/article/e4235ff99f1948b58b602ca0631e234b
Autor:
Jingcheng Zhang, Nan Shen, Chuang Li, Xingjie Xiang, Gaolei Liu, Ying Gui, Sean Patev, David S. Hibbett, Kerrie Barry, William Andreopoulos, Anna Lipzen, Robert Riley, Guifen He, Mi Yan, Igor V. Grigoriev, Hoi Shan Kwan, Man Kit Cheung, Yinbing Bian, Yang Xiao
Publikováno v:
Journal of Advanced Research, Vol 38, Iss , Pp 91-106 (2022)
Introduction: Mushroom-forming fungi comprise diverse species that develop complex multicellular structures. In cultivated species, both ecological adaptation and artificial selection have driven genome evolution. However, little is known about the c
Externí odkaz:
https://doaj.org/article/f5b4a974288c40aeaa10d3f25646c23e
Autor:
Fantin Mesny, Shingo Miyauchi, Thorsten Thiergart, Brigitte Pickel, Lea Atanasova, Magnus Karlsson, Bruno Hüttel, Kerrie W. Barry, Sajeet Haridas, Cindy Chen, Diane Bauer, William Andreopoulos, Jasmyn Pangilinan, Kurt LaButti, Robert Riley, Anna Lipzen, Alicia Clum, Elodie Drula, Bernard Henrissat, Annegret Kohler, Igor V. Grigoriev, Francis M. Martin, Stéphane Hacquard
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Plant roots host diverse fungal communities that affect plant health. Here, Mesny et al. use comparative genomics and transcriptomics of fungal isolates from the Arabidopsis thaliana root mycobiota, together with root colonization assays, to identify
Externí odkaz:
https://doaj.org/article/64cab377d5de498881072d993e90716d
Autor:
Ole Christian Hagestad, Lingwei Hou, Jeanette H. Andersen, Espen H. Hansen, Bjørn Altermark, Chun Li, Eric Kuhnert, Russell J. Cox, Pedro W. Crous, Joseph W. Spatafora, Kathleen Lail, Mojgan Amirebrahimi, Anna Lipzen, Jasmyn Pangilinan, William Andreopoulos, Richard D. Hayes, Vivian Ng, Igor V. Grigoriev, Stephen A. Jackson, Thomas D. S. Sutton, Alan D. W. Dobson, Teppo Rämä
Publikováno v:
IMA Fungus, Vol 12, Iss 1, Pp 1-23 (2021)
ABSTRACT Marine fungi remain poorly covered in global genome sequencing campaigns; the 1000 fungal genomes (1KFG) project attempts to shed light on the diversity, ecology and potential industrial use of overlooked and poorly resolved fungal taxa. Thi
Externí odkaz:
https://doaj.org/article/2d4678d8f908489583a2e1a111df6ec7
Autor:
Ying Gui, Igor V. Grigoriev, Yang Xiao, Yinbing Bian, Xingjie Xiang, Nan Shen, William Andreopoulos, Kerrie Barry, Anna Lipzen, David S. Hibbett, Chuang Li, Robert Riley, Mi Yan, Sean Patev, Hoi Shan Kwan, Jingcheng Zhang, Guifen He, Man Kit Cheung, Gaolei Liu
Publikováno v:
Journal of Advanced Research. 38:91-106
Introduction Mushroom-forming fungi comprise diverse species that develop complex multicellular structures. In cultivated species, both ecological adaptation and artificial selection have driven genome evolution. However, little is known about the co
Autor:
Jonathan M Plett, Shingo Miyauchi, Emmanuelle Morin, Krista Plett, Johanna Wong-Bajracharya, Maira de Freitas Pereira, Alan Kuo, Bernard Henrissat, Elodie Drula, Dominika Wojtalewicz, Robert Riley, Jasmyn Pangilinan, William Andreopoulos, Kurt LaButti, Chris Daum, Yuko Yoshinaga, Laure Fauchery, Vivian Ng, Anna Lipzen, Kerrie Barry, Vasanth Singan, Jie Guo, Teresa Lebel, Mauricio Dutra Costa, Igor V Grigoriev, Francis Martin, Ian C Anderson, Annegret Kohler
Publikováno v:
Molecular Biology and Evolution
Molecular Biology and Evolution, 2023, 40 (3), pp.msad045. ⟨10.1093/molbev/msad045⟩
Molecular biology and evolution, vol 40, iss 3
Plett, J M, Miyauchi, S, Morin, E, Plett, K, Wong-Bajracharya, J, de Freitas Pereira, M, Kuo, A, Henrissat, B, Drula, E, Wojtalewicz, D, Riley, R, Pangilinan, J, Andreopoulos, W, LaButti, K, Daum, C, Yoshinaga, Y, Fauchery, L, Ng, V, Lipzen, A, Barry, K, Singan, V, Guo, J, Lebel, T, Costa, M D, Grigoriev, I V, Martin, F, Anderson, I C & Kohler, A 2023, ' Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus ', Molecular Biology and Evolution, vol. 40, no. 3, msad045 . https://doi.org/10.1093/molbev/msad045
Molecular Biology and Evolution, 2023, 40 (3), pp.msad045. ⟨10.1093/molbev/msad045⟩
Molecular biology and evolution, vol 40, iss 3
Plett, J M, Miyauchi, S, Morin, E, Plett, K, Wong-Bajracharya, J, de Freitas Pereira, M, Kuo, A, Henrissat, B, Drula, E, Wojtalewicz, D, Riley, R, Pangilinan, J, Andreopoulos, W, LaButti, K, Daum, C, Yoshinaga, Y, Fauchery, L, Ng, V, Lipzen, A, Barry, K, Singan, V, Guo, J, Lebel, T, Costa, M D, Grigoriev, I V, Martin, F, Anderson, I C & Kohler, A 2023, ' Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus ', Molecular Biology and Evolution, vol. 40, no. 3, msad045 . https://doi.org/10.1093/molbev/msad045
The mutualistic ectomycorrhizal (ECM) fungal genus Pisolithus comprises 19 species defined to date which colonize the roots of >50 hosts worldwide suggesting that substantial genomic and functional evolution occurred during speciation. To better unde
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8cfa2cd363e65d95b3e9b302c3b3445e
https://hal.inrae.fr/hal-04143140/document
https://hal.inrae.fr/hal-04143140/document
Autor:
Sean Sierra-Patev, Byoungnam Min, Miguel Naranjo-Ortiz, Brian Looney, Zachary Konkel, Jason C. Slot, Yuichi Sakamoto, Jacob L. Steenwyk, Antonis Rokas, Juan Carro, Susana Camarero, Patricia Ferreira, Gonzalo Molpeceres, Francisco J. Ruiz-Dueñas, Ana Serrano, Bernard Henrissat, Elodie Drula, Karen W. Hughes, Juan L. Mata, Noemia Kazue Ishikawa, Ruby Vargas-Isla, Shuji Ushijima, Chris A. Smith, John Donoghue, Steven Ahrendt, William Andreopoulos, Guifen He, Kurt LaButti, Anna Lipzen, Vivian Ng, Robert Riley, Laura Sandor, Kerrie Barry, Angel T. Martínez, Yang Xiao, John G. Gibbons, Kazuhisa Terashima, Igor V. Grigoriev, David Hibbett
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (10), pp.e2214076120. ⟨10.1073/pnas.2214076120⟩
Sierra-Patev, S, Min, B, Naranjo-Ortiz, M, Looney, B, Konkel, Z, Slot, J C, Sakamoto, Y, Steenwyk, J L, Rokas, A, Carro, J, Camarero, S, Ferreira, P, Molpeceres, G, Ruiz-Dueñas, F J, Serrano, A, Henrissat, B, Drula, E, Hughes, K W, Mata, J L, Ishikawa, N K, Vargas-Isla, R, Ushijima, S, Smith, C A, Donoghue, J, Ahrendt, S, Andreopoulos, W, He, G, LaButti, K, Lipzen, A, Ng, V, Riley, R, Sandor, L, Barry, K, Martínez, A T, Xiao, Y, Gibbons, J G, Terashima, K, Grigoriev, I V & Hibbett, D 2023, ' A global phylogenomic analysis of the shiitake genus Lentinula ', Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 10, e2214076120 . https://doi.org/10.1073/pnas.2214076120
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (10), pp.e2214076120. ⟨10.1073/pnas.2214076120⟩
Sierra-Patev, S, Min, B, Naranjo-Ortiz, M, Looney, B, Konkel, Z, Slot, J C, Sakamoto, Y, Steenwyk, J L, Rokas, A, Carro, J, Camarero, S, Ferreira, P, Molpeceres, G, Ruiz-Dueñas, F J, Serrano, A, Henrissat, B, Drula, E, Hughes, K W, Mata, J L, Ishikawa, N K, Vargas-Isla, R, Ushijima, S, Smith, C A, Donoghue, J, Ahrendt, S, Andreopoulos, W, He, G, LaButti, K, Lipzen, A, Ng, V, Riley, R, Sandor, L, Barry, K, Martínez, A T, Xiao, Y, Gibbons, J G, Terashima, K, Grigoriev, I V & Hibbett, D 2023, ' A global phylogenomic analysis of the shiitake genus Lentinula ', Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 10, e2214076120 . https://doi.org/10.1073/pnas.2214076120
10 p.-6 fig.
Lentinula is a broadly distributed group of fungi that contains the cultivated shiitake mushroom, L. edodes. We sequenced 24 genomes representing eight described species and several unnamed lineages of Lentinula from 15 countries on
Lentinula is a broadly distributed group of fungi that contains the cultivated shiitake mushroom, L. edodes. We sequenced 24 genomes representing eight described species and several unnamed lineages of Lentinula from 15 countries on
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::75bfdfa962c5630641f49f427a5674cc
http://hdl.handle.net/10261/296641
http://hdl.handle.net/10261/296641
Autor:
Anna Lipzen, Pierre-Emmanuel Courty, Robert Riley, Brian Looney, Alan Kuo, Elodie Drula, Igor V. Grigoriev, Annegret Kohler, Andrew Tritt, David S. Hibbett, Kerrie Barry, Jesse L. Labbé, László Nagy, Matt Nolan, P. Brandon Matheny, Francis Martin, Shingo Miyauchi, Jenifer Johnson, Emmanuelle Morin, Jasmyn Pangilinan, Bernard Henrissat, Guifen He, Kurt LaButti, William Andreopoulos
Publikováno v:
New Phytologist
New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩
New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩
International audience; Summary The ectomycorrhizal (ECM) symbiosis has independently evolved from diverse types of saprotrophic ancestors. In this study, we seek to identify genomic signatures of the transition to the ECM habit within the hyper-dive
Autor:
Riccardo Baroncelli, José F. Cobo-Díaz, Tiziano Benocci, Mao Peng, Evy Battaglia, Sajeet Haridas, William Andreopoulos, Kurt LaButti, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Diane Bauer, Gaetan Le Floch, Miia R. Mäkelä, Elodie Drula, Bernard Henrissat, Igor V. Grigoriev, Jo Anne Crouch, Ronald P. de Vries, Serenella A. Sukno, Michael R. Thon
Colletotrichum fungi infect a wide diversity of monocot and eudicot hosts, causing plant diseases on almost all economically important crops worldwide. In addition to its economic impact, Colletotrichum is a suitable model for the study of gene famil
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b2e839110af44b20137d7f46a3ee084b
https://doi.org/10.1101/2022.09.22.508453
https://doi.org/10.1101/2022.09.22.508453
Autor:
Kevin R. Amses, D. Rabern Simmons, Joyce E. Longcore, Stephen J. Mondo, Kensuke Seto, Gustavo H. Jerônimo, Anne E. Bonds, C. Alisha Quandt, William J. Davis, Ying Chang, Brian A. Federici, Alan Kuo, Kurt LaButti, Jasmyn Pangilinan, William Andreopoulos, Andrew Tritt, Robert Riley, Hope Hundley, Jenifer Johnson, Anna Lipzen, Kerrie Barry, B. Franz Lang, Christina A. Cuomo, Nicolas E. Buchler, Igor V. Grigoriev, Joseph W. Spatafora, Jason E. Stajich, Timothy Y. James
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America. 119(36)
Most of the described species in kingdom Fungi are contained in two phyla, the Ascomycota and the Basidiomycota (subkingdom Dikarya). As a result, our understanding of the biology of the kingdom is heavily influenced by traits observed in Dikarya, su