Zobrazeno 1 - 10
of 363
pro vyhledávání: '"William A. Baumgartner"'
Autor:
Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner, Lawrence E. Hunter
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-22 (2024)
Abstract Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significant integration challenge
Externí odkaz:
https://doaj.org/article/2ba11bcf971c40478fb1f6a852218703
Autor:
Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner, Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin Reese, Jessica Sinclair, Sanya B. Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin A. Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn
Publikováno v:
npj Digital Medicine, Vol 6, Iss 1, Pp 1-18 (2023)
Abstract Common data models solve many challenges of standardizing electronic health record (EHR) data but are unable to semantically integrate all of the resources needed for deep phenotyping. Open Biological and Biomedical Ontology (OBO) Foundry on
Externí odkaz:
https://doaj.org/article/19e71d5e4d104d89b86f312e42ae7202
Publikováno v:
BMC Bioinformatics, Vol 22, Iss S1, Pp 1-38 (2021)
Abstract Background Automated assignment of specific ontology concepts to mentions in text is a critical task in biomedical natural language processing, and the subject of many open shared tasks. Although the current state of the art involves the use
Externí odkaz:
https://doaj.org/article/6f47dcbd9ac54cd0a5847baa56b2267a
Autor:
K. Bretonnel Cohen, Arrick Lanfranchi, Miji Joo-young Choi, Michael Bada, William A. Baumgartner, Natalya Panteleyeva, Karin Verspoor, Martha Palmer, Lawrence E. Hunter
Publikováno v:
BMC Bioinformatics, Vol 18, Iss 1, Pp 1-14 (2017)
Abstract Background Coreference resolution is the task of finding strings in text that have the same referent as other strings. Failures of coreference resolution are a common cause of false negatives in information extraction from the scientific lit
Externí odkaz:
https://doaj.org/article/808c258a08804fd3871345b137a279ca
Autor:
Anna Ostropolets, Yasser Albogami, Mitchell Conover, Juan M Banda, William A Baumgartner, Clair Blacketer, Priyamvada Desai, Scott L DuVall, Stephen Fortin, James P Gilbert, Asieh Golozar, Joshua Ide, Andrew S Kanter, David M Kern, Chungsoo Kim, Lana Y H Lai, Chenyu Li, Feifan Liu, Kristine E Lynch, Evan Minty, Maria Inês Neves, Ding Quan Ng, Tontel Obene, Victor Pera, Nicole Pratt, Gowtham Rao, Nadav Rappoport, Ines Reinecke, Paola Saroufim, Azza Shoaibi, Katherine Simon, Marc A Suchard, Joel N Swerdel, Erica A Voss, James Weaver, Linying Zhang, George Hripcsak, Patrick B Ryan
Publikováno v:
Journal of the American Medical Informatics Association : JAMIA, 30(5), 859-868. Oxford University Press
Objective Observational studies can impact patient care but must be robust and reproducible. Nonreproducibility is primarily caused by unclear reporting of design choices and analytic procedures. This study aimed to: (1) assess how the study logic de
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c2d69de85b3cb0a18d90c106f56e7d55
https://pure.eur.nl/en/publications/e94c869e-7d3e-49ce-ac1f-7601060bd459
https://pure.eur.nl/en/publications/e94c869e-7d3e-49ce-ac1f-7601060bd459
Autor:
Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner, Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin Reese, Jessica Sinclair, Sanya B. Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin A. Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn
Background: Common data models solve many challenges of standardizing electronic health record (EHR) data, but are unable to semantically integrate all the resources needed for deep phenotyping. Open Biological and Biomedical Ontology (OBO) Foundry o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d6a05492e9f21fa9f6acd0ca9b5777c
Autor:
William A. Baumgartner, Jennifer S. Lawton, Eric Etchill, Michael V. Johnston, Mary Ann Wilson, Sylvia Torres-Odio, Katherine Giuliano, Mary E. Blue, Patrice Carr, C. Conover Talbot
Publikováno v:
J Surg Res
Background Hypothermic circulatory arrest (HCA) is a technique used for complex repair of the aorta, but it can be associated with neurologic morbidity. To better understand the molecular changes that underlie ischemic brain injury, we assessed gene
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::501f71a25b3630280011692bd338fd96
https://doi.org/10.1016/j.jss.2021.02.014
https://doi.org/10.1016/j.jss.2021.02.014
Autor:
Charles D. Fraser, Glenn J. Whitman, Ryan J. Tedford, Kenton J. Zehr, Bhavadharini Ramu, Todd C. Crawford, Alejandro Suarez-Pierre, Farooq H. Sheikh, William A. Baumgartner, Kavita Sharma, Teresa De Marco, Peter J. Leary, J. Trent Magruder, Bradley A. Maron, S. Carolina Masri, Brian A. Houston, Nisha A. Gilotra, Stuart D. Russell
Publikováno v:
Chest. 157:151-161
Background At the recent 6th World Symposium on Pulmonary Hypertension (PH), the definition of PH was redefined to include lower pulmonary artery pressures in the setting of elevated pulmonary vascular resistance (PVR). However, the relevance of this
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1956c1ff0ee5946a604d28ba6adec342
https://doi.org/10.1016/j.chest.2019.07.028
https://doi.org/10.1016/j.chest.2019.07.028
Publikováno v:
BMC Bioinformatics, Vol 22, Iss S1, Pp 1-39 (2021)
BMC Bioinformatics
BMC Bioinformatics
BackgroundAutomated assignment of specific ontology concepts to mentions in text is a critical task in biomedical natural language processing, and the subject of many open shared tasks. Although the current state of the art involves the use of neural
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::71c3b25a953fff9d2606adfd4e0f18bb
https://doi.org/10.1186/s12859-021-04141-4
https://doi.org/10.1186/s12859-021-04141-4
Association between Hypotension, Low Ejection Fraction and Cognitive Performance in Cardiac Patients
Autor:
Rebecca F. Gottesman, Maura A. Grega, Maryanne M. Bailey, Scott L. Zeger, William A. Baumgartner, Guy M. McKhann, Ola A. Selnes
Publikováno v:
Behavioural Neurology, Vol 22, Iss 1-2, Pp 63-71 (2010)
Background and Purpose: Impaired cardiac function can adversely affect the brain via decreased perfusion. The purpose of this study was to determine if cardiac ejection fraction (EF) is associated with cognitive performance, and whether this is modif
Externí odkaz:
https://doaj.org/article/06f5ac8ba79e4f81ad5521bbad51874b