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Correlation of gene expression and protein production rate - a system wide study

Autor: Arvas Mikko, Pakula Tiina, Smit Bart, Rautio Jari, Koivistoinen Heini, Jouhten Paula, Lindfors Erno, Wiebe Marilyn, Penttilä Merja, Saloheimo Markku

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 616 (2011)

Abstract Background Growth rate is a major determinant of intracellular function. However its effects can only be properly dissected with technically demanding chemostat cultivations in which it can be controlled. Recent work on Saccharomyces cerevis

Externí odkaz: https://doaj.org/article/8539c3ae147b432e85267ecf63d16f8b

Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae

Autor: Wiebe Marilyn G, Pitkänen Juha-Pekka, Toivari Mervi, Rintala Eija, Ruohonen Laura, Penttilä Merja

Publikováno v: BMC Genomics, Vol 10, Iss 1, p 461 (2009)

Abstract Background The industrially important yeast Saccharomyces cerevisiae is able to grow both in the presence and absence of oxygen. However, the regulation of its metabolism in conditions of intermediate oxygen availability is not well characte

Externí odkaz: https://doaj.org/article/328204c14b6e446f80255a178cdf72c1

Transcriptional monitoring of steady state and effects of anaerobic phases in chemostat cultures of the filamentous fungus Trichoderma reesei

Autor: Penttilä Merja, Wiebe Marilyn, Smit Bart A, Rautio Jari J, Saloheimo Markku

Publikováno v: BMC Genomics, Vol 7, Iss 1, p 247 (2006)

Abstract Background Chemostat cultures are commonly used in production of cellular material for systems-wide biological studies. We have used the novel TRAC (transcript analysis with aid of affinity capture) method to study expression stability of ap

Externí odkaz: https://doaj.org/article/ec37a4f2a9cb4249907aed26692ca405

Mapping niche-specific two-component system requirements in uropathogenic Escherichia coli .

Autor: Brannon JR; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Reasoner SA; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Bermudez TA; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Comer SL; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Wiebe MA; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Dunigan TL; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Beebout CJ; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Ross T; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Bamidele A; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Hadjifrangiskou M; Department of Pathology, Microbiology and Immunology, Division of Molecular Pathogenesis, Vanderbilt University Medical Center, Nashville, Tennessee, USA.; Department of Urology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.

Publikováno v: Microbiology spectrum [Microbiol Spectr] 2024 Apr 02; Vol. 12 (4), pp. e0223623. Date of Electronic Publication: 2024 Feb 22.