Phage-mediated resolution of genetic conflict alters the evolutionary trajectory of Pseudomonas aeruginosa lysogens.

Autor: Suttenfield LC; Department of Microbiology, School of Molecular and Cellular Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Rapti Z; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Department of Mathematics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Chandrashekhar JH; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Steinlein AC; Department of Microbiology, School of Molecular and Cellular Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Vera JC; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Kim T; Department of Microbiology, School of Molecular and Cellular Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA., Whitaker RJ; Department of Microbiology, School of Molecular and Cellular Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.

Publikováno v: MSystems [mSystems] 2024 Sep 17; Vol. 9 (9), pp. e0080124. Date of Electronic Publication: 2024 Aug 21.

Phage-Antibiotic Synergy Inhibited by Temperate and Chronic Virus Competition.

Autor: Landa KJ; Department of Mathematics, Statistics, and Computer Science, St. Olaf College, Northfield, MN, 55057, USA., Mossman LM; Department of Mathematics, Statistics, and Computer Science, St. Olaf College, Northfield, MN, 55057, USA., Whitaker RJ; Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA., Rapti Z; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.; Department of Mathematics, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA., Clifton SM; Department of Mathematics, Statistics, and Computer Science, St. Olaf College, Northfield, MN, 55057, USA. clifto2@stolaf.edu.

Publikováno v: Bulletin of mathematical biology [Bull Math Biol] 2022 Mar 22; Vol. 84 (5), pp. 54. Date of Electronic Publication: 2022 Mar 22.

Genomic insight and physiological characterization of thermoacidophilic Alicyclobacillus isolated from Yellowstone National Park.

Autor: Kim HW; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Materials Research Laboratory, Energy and Biosciences Institute, University of Illinois at Urbana-Champaign, Champaign, IL, United States., Kim NK; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Materials Research Laboratory, Energy and Biosciences Institute, University of Illinois at Urbana-Champaign, Champaign, IL, United States., Phillips APR; Department of Microbiology, University of Illinois at Urbana-Champaign, Champaign, IL, United States., Parker DA; Materials Research Laboratory, Energy and Biosciences Institute, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Westhollow Technology Center, Shell Exploration and Production Inc., Houston, TX, United States., Liu P; Materials Research Laboratory, Energy and Biosciences Institute, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Westhollow Technology Center, Shell Exploration and Production Inc., Houston, TX, United States., Whitaker RJ; Department of Microbiology, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, United States., Rao CV; Materials Research Laboratory, Energy and Biosciences Institute, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Champaign, IL, United States., Mackie RI; Department of Animal Sciences, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Materials Research Laboratory, Energy and Biosciences Institute, University of Illinois at Urbana-Champaign, Champaign, IL, United States.; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, United States.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2023 Sep 26; Vol. 14, pp. 1232587. Date of Electronic Publication: 2023 Sep 26 (Print Publication: 2023).

A Rapid Targeted Gene Inactivation Approach in Sulfolobus islandicus.

Autor: Zhang C; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA. cyz@illinois.edu.; Department of Microbiology, University of Illinois at Urbana-Champaign, Champaign, IL, USA. cyz@illinois.edu., Taluja SM; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.; Department of Microbiology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.; New Beasley Laboratory, Texas A&M University, College Station, TX, USA., Hallett EN; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.; Department of Microbiology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.; Institut national de la recherche scientifique-Centre Eau Terre Environnement, Québec, QC, Canada., Whitaker RJ; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.; Department of Microbiology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.

Publikováno v: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2022; Vol. 2522, pp. 145-162.

Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in "Pink Berry" Marine Microbial Aggregates.

Autor: Kosmopoulos JC; Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA.; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, Wisconsin, USA.; Microbial Diversity 2020, University of Chicago Marine Biological Laboratory, Falmouth, Massachusetts, USA., Campbell DE; Microbial Diversity 2020, University of Chicago Marine Biological Laboratory, Falmouth, Massachusetts, USA.; Department of Medicine, Division of Infectious Diseases, Washington University School of Medicine, St. Louis, Missouri, USA.; Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, Missouri, USA., Whitaker RJ; Microbial Diversity 2020, University of Chicago Marine Biological Laboratory, Falmouth, Massachusetts, USA.; Department of Microbiology, University of Illinois, Urbana, Illinois, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, Illinois, USA., Wilbanks EG; Microbial Diversity 2020, University of Chicago Marine Biological Laboratory, Falmouth, Massachusetts, USA.; Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, California, USA.

Publikováno v: Applied and environmental microbiology [Appl Environ Microbiol] 2023 Jul 26; Vol. 89 (7), pp. e0017723. Date of Electronic Publication: 2023 Jul 05.