A minimal G$\bar{\textrm{o}}$-model for rebuilding whole genome structures from haploid single-cell Hi-C data

Autor: Wettermann, S., Brems, M., Siebert, J. T., Vu, G. T., Stevens, T. J., Virnau, P.

We present a minimal computational model, which allows very fast, on-the-fly construction of three dimensional haploid interphase genomes from single cell Hi-C contact maps using the HOOMD-blue molecular dynamics package on graphics processing units.

Externí odkaz: http://arxiv.org/abs/1904.04209

Topological comparison of flexible and semiflexible chains in polymer melts with θ-chains.

Autor: Schmitt MP; Institut für Physik, Johannes Gutenberg-Universität Mainz, Staudinger Weg 9, 55099 Mainz, Germany., Wettermann S; Institut für Physik, Johannes Gutenberg-Universität Mainz, Staudinger Weg 9, 55099 Mainz, Germany., Daoulas KC; Max Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany., Meyer H; Institut Charles Sadron, Université de Strasbourg, CNRS UPR 22, 23 rue du Loess-BP 84047, 67034 Strasbourg, France., Virnau P; Institut für Physik, Johannes Gutenberg-Universität Mainz, Staudinger Weg 9, 55099 Mainz, Germany.

Publikováno v: The Journal of chemical physics [J Chem Phys] 2024 Oct 14; Vol. 161 (14).

Knot formation of dsDNA pushed inside a nanochannel.

Autor: Rothörl J; Institut für Physik, Johannes Gutenberg-Universität, Staudinger Weg 9, 55099, Mainz, Germany., Wettermann S; Institut für Physik, Johannes Gutenberg-Universität, Staudinger Weg 9, 55099, Mainz, Germany., Virnau P; Institut für Physik, Johannes Gutenberg-Universität, Staudinger Weg 9, 55099, Mainz, Germany. virnau@uni-mainz.de., Bhattacharya A; Department of Physics, University of Central Florida, Orlando, FL, 32816-2385, USA. Aniket.Bhattacharya@ucf.edu.

Publikováno v: Scientific reports [Sci Rep] 2022 Mar 29; Vol. 12 (1), pp. 5342. Date of Electronic Publication: 2022 Mar 29.

Expansion of Single Chains Released from a Spherical Cavity.

Autor: Chu, Chia-Cheng¹ (AUTHOR), Hsiao, Pai-Yi^1,2 (AUTHOR) pyhsiao@ess.nthu.edu.tw

Publikováno v: Polymers (20734360). Jan2023, Vol. 15 Issue 1, p198. 24p.

Analyse der Effekte, die die Menge und die Qualität der Embryonen in superovulierten Kühen beeinflussen.

Autor: BEZDÍČEK, J.¹ jiri.bezdicek@upol.cz, MAKAREVICH, A.², STÁDNÍK, L.³, KUBOVIČOVÁ, ELENA², LOUDA, F.², HEGEDÜŠOVÁ, ZDEŇKA², HOLÁSEK, R.², DUCHÁČEK, J.³, STUPKA, R.³

Publikováno v: Züchtungskunde. 2015, Vol. 87 Issue 4, p249-264. 16p.