Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic.

Autor: Crits-Christoph A; Independent researcher., Levy JI; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, San Diego, CA 92037, USA., Pekar JE; Department of Biomedical Informatics, University of California, San Diego, La Jolla, San Diego, CA, USA., Goldstein SA; Department of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT, USA., Singh R; Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK, Canada., Hensel Z; ITQB NOVA, Universidade NOVA de Lisboa, Av. da República, Oeiras, Lisbon 2780-157, Portugal., Gangavarapu K; Department of Human Genetics, University of California, Los Angeles, Los Angeles, CA 90024, USA., Rogers MB; Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK, Canada., Moshiri N; Department of Computer Science & Engineering, University of California, San Diego, La Jolla, San Diego, CA, USA., Garry RF; Tulane University, School of Medicine, Department of Microbiology and Immunology, New Orleans, LA 70112, USA; Zalgen Labs, Frederick, MD 21703, USA; Global Virus Network (GVN), Baltimore, MD 21201, USA., Holmes EC; School of Medical Sciences, The University of Sydney, Sydney, NSW 2006, Australia., Koopmans MPG; Department of Viroscience, and Pandemic and Disaster Preparedness Centre, Erasmus Medical Centre, Rotterdam, the Netherlands., Lemey P; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium., Peacock TP; The Pirbright Institute, Woking GU24 0NF, Surrey, UK; Department of Infectious Disease, Imperial College London, London W2 1P, UK., Popescu S; University of Maryland, School of Medicine, Department of Epidemiology & Public Health, Baltimore, MD 21201, USA., Rambaut A; Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, UK., Robertson DL; MRC-University of Glasgow Center for Virus Research, Glasgow G61 1QH, UK., Suchard MA; Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA 90024, USA., Wertheim JO; Department of Medicine, University of California, San Diego, La Jolla, San Diego, CA, USA., Rasmussen AL; Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, SK, Canada., Andersen KG; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, San Diego, CA 92037, USA. Electronic address: andersen@scripps.edu., Worobey M; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA. Electronic address: worobey@arizona.edu., Débarre F; Institut d'Écologie et des Sciences de l'Environnement (IEES-Paris, UMR 7618), CNRS, Sorbonne Université, UPEC, IRD, INRAE, Paris, France. Electronic address: florence.debarre@sorbonne-universite.fr.

Publikováno v: Cell [Cell] 2024 Sep 19; Vol. 187 (19), pp. 5468-5482.e11.

Genomic epidemiology reveals 2022 mpox epidemic in New York City governed by heavy-tailed sexual contact networks.

Autor: Pekar JE; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA 92093, USA.; Department of Biomedical Informatics, University of California San Diego, La Jolla, CA 92093, USA.; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA., Wang Y; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA 92093, USA., Wang JC; New York City Department of Health and Mental Hygiene, Public Health Laboratory, New York, NY 11101, USA., Shao Y; Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles, Los Angeles, CA 90095, USA., Taki F; New York City Department of Health and Mental Hygiene, Public Health Laboratory, New York, NY 11101, USA., Forgione LA; New York City Department of Health and Mental Hygiene, Bureau of Hepatitis, HIV, and Sexually Transmitted Infections, Long Island City, NY 11101, USA., Amin H; New York City Department of Health and Mental Hygiene, Public Health Laboratory, New York, NY 11101, USA., Clabby T; New York City Department of Health and Mental Hygiene, Public Health Laboratory, New York, NY 11101, USA., Johnson K; New York City Department of Health and Mental Hygiene, Bureau of Hepatitis, HIV, and Sexually Transmitted Infections, Long Island City, NY 11101, USA., Torian LV; New York City Department of Health and Mental Hygiene, Bureau of Hepatitis, HIV, and Sexually Transmitted Infections, Long Island City, NY 11101, USA., Braunstein SL; New York City Department of Health and Mental Hygiene, Bureau of Hepatitis, HIV, and Sexually Transmitted Infections, Long Island City, NY 11101, USA., Pathela P; New York City Department of Health and Mental Hygiene, Bureau of Hepatitis, HIV, and Sexually Transmitted Infections, Long Island City, NY 11101, USA., Omoregie E; New York City Department of Health and Mental Hygiene, Public Health Laboratory, New York, NY 11101, USA., Hughes S; New York City Department of Health and Mental Hygiene, Public Health Laboratory, New York, NY 11101, USA., Suchard MA; Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles, Los Angeles, CA 90095, USA.; Department of Biomathematics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA.; Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA., Vasylyeva TI; Department of Population Health and Disease Prevention, University of California Irvine, Irvine, CA 92617, USA., Lemey P; Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven, Leuven, Belgium., Wertheim JO; Department of Medicine, University of California San Diego, La Jolla, CA 92093, USA.

Publikováno v: MedRxiv : the preprint server for health sciences [medRxiv] 2024 Aug 01. Date of Electronic Publication: 2024 Aug 01.

The role of socio-economic disparities in the relative success and persistence of SARS-CoV-2 variants in New York City in early 2021.

Autor: Vasylyeva TI; Department of Population Health and Disease Prevention, University of California Irvine, Irvine, California, United States of America., Havens JL; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, California, United States of America., Wang JC; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, New York, United States of America., Luoma E; Bureau of Communicable Disease, New York City Department of Health and Mental Hygiene, New York, New York, United States of America., Hassler GW; Department of Computational Medicine, University of California Los Angeles, Los Angeles, California, United States of America., Amin H; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, New York, United States of America., Di Lonardo S; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, New York, United States of America., Taki F; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, New York, United States of America., Omoregie E; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, New York, United States of America., Hughes S; New York City Public Health Laboratory, New York City Department of Health and Mental Hygiene, New York, New York, United States of America., Wertheim JO; Department of Medicine, University of California San Diego, La Jolla, California, United States of America.

Publikováno v: PLoS pathogens [PLoS Pathog] 2024 Jun 20; Vol. 20 (6), pp. e1012288. Date of Electronic Publication: 2024 Jun 20 (Print Publication: 2024).

Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting.

Autor: Keehner J; Division of Infectious Diseases, Department of Medicine, University of California-SanFrancisco, San Francisco, California, USA.; Division of Infectious Diseases and Global Public Health, Department of Medicine, UC San Diego Health, San Diego, California, USA., Abeles SR; Division of Infectious Diseases and Global Public Health, Department of Medicine, UC San Diego Health, San Diego, California, USA.; Infection Prevention and Clinical Epidemiology Unit, UC San Diego Health, San Diego, California, USA., Longhurst CA; Division of Biomedical Informatics, Department of Medicine, UC San Diego Health, La Jolla, California, USA.; Department of Pediatrics, University of California-San Diego, La Jolla, California, USA., Horton LE; Division of Infectious Diseases and Global Public Health, Department of Medicine, UC San Diego Health, San Diego, California, USA.; Infection Prevention and Clinical Epidemiology Unit, UC San Diego Health, San Diego, California, USA.; Vaccine Research and Development Unit, Pfizer Inc, San Diego, California, USA., Myers FE; Infection Prevention and Clinical Epidemiology Unit, UC San Diego Health, San Diego, California, USA., Riggs-Rodriguez L; Population Health Services Organization-Programs and Strategy, UC San Diego Health, San Diego, California, USA., Ahmad M; Information Services EMR, UC San Diego Health, San Diego, California, USA., Baxter S; Division of Biomedical Informatics at the University of California-San Diego, San Diego, California, USA., Boussina A; Division of Biomedical Informatics, University of California-San Diego, La Jolla, California, USA., Cantrell K; Department of Computer Science & Engineering, Jacobs School of Engineering, University of California, San Diego, California, USA., Cardenas P; UC San Diego Health's Contact Tracing Team, Infection Prevention and Clinical Epidemiology Unit, UC San Diego Health, San Diego, California, USA., De Hoff P; Sanford Consortium of Regenerative Medicine, University of California-San Diego, La Jolla, California, USA.; Expedited COVID Identification Environment Laboratory, Department of Pediatrics, University of California-San Diego, La Jolla, California, USA.; Division of Maternal Fetal Medicine, Department of Obstetrics, Gynecology, and Reproductive Sciences, UC San Diego Health, San Diego, California, USA., El-Kareh R; Division of Biomedical Informatics, Department of Medicine, UC San Diego Health, La Jolla, California, USA.; Division of Hospital Medicine, Department of Medicine, UC San Diego Health, La Jolla, California, USA., Holland J; Analytics and Population Health Department, UC San Diego Health, San Diego, California, USA., Ikeda D; UC San Diego Health's Contact Tracing Team, Infection Prevention and Clinical Epidemiology Unit, UC San Diego Health, San Diego, California, USA., Kurashige K; Analytics and Population Health Department, UC San Diego Health, San Diego, California, USA., Laurent LC; Sanford Consortium of Regenerative Medicine, University of California-San Diego, La Jolla, California, USA.; Expedited COVID Identification Environment Laboratory, Department of Pediatrics, University of California-San Diego, La Jolla, California, USA.; Division of Maternal Fetal Medicine, Department of Obstetrics, Gynecology, and Reproductive Sciences, UC San Diego Health, San Diego, California, USA., Lucas A; Information Services EMR, UC San Diego Health, San Diego, California, USA., Pride D; Division of Infectious Diseases and Global Public Health, Department of Medicine, UC San Diego Health, San Diego, California, USA.; Department of Pathology, UC San Diego Health, La Jolla, California, USA., Sathe S; Sanford Consortium of Regenerative Medicine, University of California-San Diego, La Jolla, California, USA.; Department of Cellular and Molecular Medicine, University of California-San Diego, La Jolla, California, USA.; Expedited COVID Identification Environment Laboratory, Department of Pediatrics, University of California-San Diego, La Jolla, California, USA., Tran AR; Information Services EMR, UC San Diego Health, San Diego, California, USA., Vasylyeva TI; Division of Infectious Diseases and Global Public Health, Department of Medicine, UC San Diego Health, San Diego, California, USA., Yeo G; Sanford Consortium of Regenerative Medicine, University of California-San Diego, La Jolla, California, USA.; Department of Cellular and Molecular Medicine, University of California-San Diego, La Jolla, California, USA.; Expedited COVID Identification Environment Laboratory, Department of Pediatrics, University of California-San Diego, La Jolla, California, USA., Knight R; Department of Pediatrics, University of California-San Diego, La Jolla, California, USA.; Department of Bioengineering, University of California-San Diego, La Jolla, California, USA.; Department of Computer Science and Engineering, University of California-San Diego, La Jolla, California, USA.; Expedited COVID Identification Environment Laboratory, Department of Pediatrics, University of California-San Diego, La Jolla, California, USA.; Center for Microbiome Innovation, University of California-San Diego, La Jolla, California, USA., Wertheim JO; Division of Infectious Diseases and Global Public Health, Department of Medicine, UC San Diego Health, San Diego, California, USA., Torriani FJ; Division of Infectious Diseases and Global Public Health, Department of Medicine, UC San Diego Health, San Diego, California, USA.; Infection Prevention and Clinical Epidemiology Unit, UC San Diego Health, San Diego, California, USA.

Publikováno v: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America [Clin Infect Dis] 2024 May 15; Vol. 78 (5), pp. 1204-1213.

Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics.

Autor: Matteson NL; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA. Electronic address: natem@scripps.edu., Hassler GW; Department of Computational Medicine, University of California, Los Angeles, Los Angeles, CA, USA., Kurzban E; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Schwab MA; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Perkins SA; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Gangavarapu K; Department of Biomathematics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, Los Angeles, CA, USA; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Levy JI; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Parker E; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Pride D; Department of Pathology, University of California, San Diego, La Jolla, CA, USA; Department of Medicine, University of California, San Diego, La Jolla, CA, USA., Hakim A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., De Hoff P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Cheung W; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; COVID-19 Detection, Investigation, Surveillance, Clinical, and Outbreak Response, California Department of Public Health, Richmond, CA, USA., Castro-Martinez A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; Sanford Consortium of Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA., Rivera A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Veder A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Rivera A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Wauer C; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Holmes J; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Wilson J; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Ngo SN; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Plascencia A; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Lawrence ES; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Smoot EW; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Eisner ER; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Tsai R; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Chacón M; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Baer NA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Seaver P; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Salido RA; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Aigner S; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Ngo TT; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Barber T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Ostrander T; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Fielding-Miller R; Herbert Wertheim School of Public Health and Human Longevity Science, University of California, San Diego, La Jolla, CA, USA; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA., Simmons EH; Academic Affairs, University of California, San Diego, La Jolla, CA, USA., Zazueta OE; Department of Epidemiology, Secretaria de Salud de Baja California, Tijuana, Baja California, Mexico., Serafin-Higuera I; Centro de Diagnostico COVID-19 UABC, Tijuana, Baja California, Mexico., Sanchez-Alavez M; Centro de Diagnostico COVID-19 UABC, Tijuana, Baja California, Mexico; Department of Molecular Medicine, Scripps Research, La Jolla, CA, USA., Moreno-Camacho JL; Clinical Laboratory Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., García-Gil A; Clinical Laboratory Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Murphy Schafer AR; County of San Diego Health and Human Services Agency, San Diego, CA, USA., McDonald E; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Corrigan J; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Malone JD; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Stous S; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Shah S; County of San Diego Health and Human Services Agency, San Diego, CA, USA., Moshiri N; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA., Weiss A; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Anderson C; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Aceves CM; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Spencer EG; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Hufbauer EC; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Lee JJ; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., King AJ; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Ramesh KS; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Nguyen KN; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Saucedo K; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Robles-Sikisaka R; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Fisch KM; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; Center for Computational Biology and Bioinformatics, University of California San Diego, La Jolla, CA, USA., Gonias SL; Department of Pathology, University of California, San Diego, La Jolla, CA, USA., Birmingham A; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Karthikeyan S; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA., Martin NK; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA., Schooley RT; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA., Negrete AJ; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Reyna HJ; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Chavez JR; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Garcia ML; Facultad de Ciencias de la Salud Universidad Autonoma de Baja California Valle de Las Palmas, Tijuana, Baja California, Mexico., Cornejo-Bravo JM; Facultad de Ciencias Quimicas e Ingenieria, Universidad Autonoma de Baja California, Tijuana, Baja California, Mexico., Becker D; Helix, San Mateo, CA, USA., Isaksson M; Helix, San Mateo, CA, USA., Washington NL; Helix, San Mateo, CA, USA., Lee W; Helix, San Mateo, CA, USA., Garfein RS; Herbert Wertheim School of Public Health and Human Longevity Science, University of California, San Diego, La Jolla, CA, USA., Luna-Ruiz Esparza MA; Innovation and Research Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Alcántar-Fernández J; Innovation and Research Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Henson B; Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA, USA., Jepsen K; Institute for Genomic Medicine, University of California, San Diego, La Jolla, CA, USA., Olivares-Flores B; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Barrera-Badillo G; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Lopez-Martínez I; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Ramírez-González JE; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Flores-León R; Instituto de Diagnóstico y Referencia Epidemiológicos (InDRE), Ciudad de México, CDMX, Mexico., Kingsmore SF; Rady Children's Institute for Genomic Medicine, San Diego, CA, USA., Sanders A; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Pradenas A; Return to Learn, University of California, San Diego, La Jolla, CA, USA., White B; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Matthews G; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Hale M; Return to Learn, University of California, San Diego, La Jolla, CA, USA., McLawhon RW; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Reed SL; Return to Learn, University of California, San Diego, La Jolla, CA, USA., Winbush T; Return to Learn, University of California, San Diego, La Jolla, CA, USA., McHardy IH; Scripps Health, La Jolla, San Diego, CA, USA., Fielding RA; Scripps Health, La Jolla, San Diego, CA, USA., Nicholson L; Scripps Health, La Jolla, San Diego, CA, USA., Quigley MM; Scripps Health, La Jolla, San Diego, CA, USA., Harding A; Sharp Healthcare, San Diego, CA, USA., Mendoza A; Sharp Healthcare, San Diego, CA, USA., Bakhtar O; Sharp Healthcare, San Diego, CA, USA., Browne SH; Division of Infectious Disease and Global Public Health, University of California, San Diego, La Jolla, CA, USA; Specialist in Global Health, Encinitas, CA, USA., Olivas Flores J; Facultad de Ciencias Quimicas e Ingenieria, Universidad Autonoma de Baja California, Tijuana, Baja California, Mexico; University of HealthMx, Tijuana, Baja California, Mexico., Rincon Rodríguez DG; University of HealthMx, Tijuana, Baja California, Mexico; Facultad de Medicina, Universidad Xochicalco, Tijuana, Baja California, Mexico., Gonzalez Ibarra M; University of HealthMx, Tijuana, Baja California, Mexico; Facultad de Medicina, Universidad Xochicalco, Tijuana, Baja California, Mexico., Robles Ibarra LC; University of HealthMx, Tijuana, Baja California, Mexico; Instituto de Seguridad y Servicios Sociales de los Trabajadores del Estado, Tijuana, Baja California, Mexico., Arellano Vera BJ; University of HealthMx, Tijuana, Baja California, Mexico; Instituto Mexicano del Seguro Social, Tijuana, Baja California, Mexico., Gonzalez Garcia J; University of HealthMx, Tijuana, Baja California, Mexico; SIMNSA, Tijuana, Baja California, Mexico., Harvey-Vera A; University of California, San Diego, La Jolla, CA, USA., Knight R; Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA; Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA., Laurent LC; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Department of Obstetrics, Gynecology, and Reproductive Sciences, University of California, San Diego, La Jolla, CA, USA; Sanford Consortium of Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA., Yeo GW; Expedited COVID Identification Environment (EXCITE) Laboratory, Department of Pediatrics, University of California, San Diego, La Jolla, CA, USA; Sanford Consortium of Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA., Wertheim JO; Department of Medicine, University of California, San Diego, La Jolla, CA, USA., Ji X; Department of Mathematics, School of Science and Engineering, Tulane University, New Orleans, LA, USA., Worobey M; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA., Suchard MA; Department of Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA., Andersen KG; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA. Electronic address: andersen@scripps.edu., Campos-Romero A; Innovation and Research Department, Salud Digna, A.C, Tijuana, Baja California, Mexico., Wohl S; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA., Zeller M; Department of Immunology and Microbiology, Scripps Research, La Jolla, CA, USA. Electronic address: zellerm@scripps.edu.

Publikováno v: Cell [Cell] 2023 Dec 21; Vol. 186 (26), pp. 5690-5704.e20. Date of Electronic Publication: 2023 Dec 14.