Zobrazeno 1 - 10
of 47
pro vyhledávání: '"Weiqian Cao"'
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract Precision mapping of site-specific glycans using mass spectrometry is vital in glycoproteomics. However, the diversity of glycan compositions across species often exceeds database capacity, hindering the identification of rare glycans. Here,
Externí odkaz:
https://doaj.org/article/d80dc6f5ca1b4728ac2c8466a53a42dc
Autor:
Siyuan Kong, Pengyun Gong, Wen-Feng Zeng, Biyun Jiang, Xinhang Hou, Yang Zhang, Huanhuan Zhao, Mingqi Liu, Guoquan Yan, Xinwen Zhou, Xihua Qiao, Mengxi Wu, Pengyuan Yang, Chao Liu, Weiqian Cao
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)
Software tools for larger-scale intact glycopeptide quantification lag far behind, which hinders exploring the differential sitespecific glycosylation. Here, the authors report pGlycoQuant, a generic tool with a deep learning model for quantitative g
Externí odkaz:
https://doaj.org/article/4e19c5bfaebf4b2caa4c34b276ad7c3e
Publikováno v:
Frontiers in Immunology, Vol 14 (2023)
Protein glycosylation is a widespread posttranslational modification that can impact the function of proteins. Dysregulated protein glycosylation has been linked to several diseases, including chronic respiratory diseases (CRDs). CRDs pose a signific
Externí odkaz:
https://doaj.org/article/be41a32c03f1492388033584b13c965e
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Data independent acquisition (DIA) proteomics provides deep coverage and high quantitative accuracy, but is not yet well established in glycoproteomics. Here, the authors develop a DIA-based glycoproteomics workflow with stringent statistical control
Externí odkaz:
https://doaj.org/article/6dbee40a30b54804a854177e6a6906a1
Publikováno v:
Frontiers in Chemistry, Vol 9 (2021)
MALDI-MS-based glycan isotope labeling methods have been effectively and widely used for quantitative glycomics. However, interpretation of the data produced by MALDI-MS is inaccurate and tedious because the bioinformatic tools are inadequate. In thi
Externí odkaz:
https://doaj.org/article/357d2f9ac4134adb822e259400209f48
Publikováno v:
Journal of Ophthalmology, Vol 2021 (2021)
Purpose. To assess the efficacy and safety of transepithelial photorefractive keratectomy (TPRK) without mitomycin C as treatment for femtosecond laser in situ keratomileusis (FS-LASIK) corneal flap complications. Methods. Eight patients with corneal
Externí odkaz:
https://doaj.org/article/fe1989084e8e491882cb75d7a17d0d8c
Publikováno v:
PLoS ONE, Vol 8, Iss 10, p e76399 (2013)
O-linked β-N-acetylglucosamine (O-GlcNAc) is an important post-translational modification (PTM) consisting of a single N-acetylglucosamine moiety attached via an O-β-glycosidic linkage to serine and threonine residues. Glycosylation with O-GlcNAc o
Externí odkaz:
https://doaj.org/article/ee8d81193bb04a19871e1a0c370c5732
Autor:
Ming-Qi Liu, Guy Treves, Matthew Amicucci, Andres Guerrero, Gege Xu, Tian-Qi Gong, Jasmine Davis, Dayoung Park, Ace Galermo, Lauren Wu, Weiqian Cao, Carlito B. Lebrilla
Publikováno v:
Analytical Chemistry.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::caf02a2a605a825a6b4ce928c2a70454
https://doi.org/10.1021/acs.analchem.3c00083
https://doi.org/10.1021/acs.analchem.3c00083
Publikováno v:
Nature Methods. 18:1515-1523
Great advances have been made in mass spectrometric data interpretation for intact glycopeptide analysis. However, accurate identification of intact glycopeptides and modified saccharide units at the site-specific level and with fast speed remains ch
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97437cd9d4682cff32aae69f69da8fbe
https://doi.org/10.1038/s41592-021-01306-0
https://doi.org/10.1038/s41592-021-01306-0
Autor:
Robert J. Chalkley, Kai Hooi Khoo, Daniel Kolarich, Erdmann Rapp, Yong Zhang, Hung Yi Wu, Miloslav Sanda, Jonas Nilsson, Enes Sakalli, Gun Wook Park, Doron Kletter, Kathirvel Alagesan, Katalin F. Medzihradszky, Rebeca Kawahara, Nathan Edwards, Radoslav Goldman, Nicolle H. Packer, Yehia Mechref, Wantao Ying, Joseph Zaia, Sriram Neelamegham, Bo Meng, Sergey Y. Vakhrushev, Benjamin L. Schulz, Markus Pioch, Benoit Liquet, Jin Young Kim, Johannes Stadlmann, Benjamin L. Parker, Terry Nguyen-Khuong, Jong Shin Yoo, Adam Pap, Nichollas E. Scott, Mingqi Liu, Marcus Hoffmann, Morten Thaysen-Andersen, Jingfu Zhao, Yingwei Hu, Göran Larson, Matthew S F Choo, Pengyuan Yang, Josef M. Penninger, Marshall Bern, Christina M. Woo, Weiqian Cao, Toan K. Phung, Giuseppe Palmisano, Kai Cheng, Anastasia Chernykh, Stuart M. Haslam, Yifan Huang, Hui Zhang, Cassandra L. Pegg, Georgy Sofronov
Publikováno v:
Nature Methods
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Nature methods, vol 18, iss 11
Kawahara, R, Chernykh, A, Alagesan, K, Bern, M, Cao, W, Chalkley, R J, Cheng, K, Choo, M S, Edwards, N, Goldman, R, Hoffmann, M, Hu, Y, Huang, Y, Kim, J Y, Kletter, D, Liquet, B, Liu, M, Mechref, Y, Meng, B, Neelamegham, S, Nguyen-Khuong, T, Nilsson, J, Pap, A, Park, G W, Parker, B L, Pegg, C L, Penninger, J M, Phung, T K, Pioch, M, Rapp, E, Sakalli, E, Sanda, M, Schulz, B L, Scott, N E, Sofronov, G, Stadlmann, J, Vakhrushev, S Y, Woo, C M, Wu, H Y, Yang, P, Ying, W, Zhang, H, Zhang, Y, Zhao, J, Zaia, J, Haslam, S M, Palmisano, G, Yoo, J S, Larson, G, Khoo, K H, Medzihradszky, K F, Kolarich, D, Packer, N H & Thaysen-Andersen, M 2021, ' Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis ', Nature Methods, vol. 18, no. 11, pp. 1304-1316 . https://doi.org/10.1038/s41592-021-01309-x
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Nature methods, vol 18, iss 11
Kawahara, R, Chernykh, A, Alagesan, K, Bern, M, Cao, W, Chalkley, R J, Cheng, K, Choo, M S, Edwards, N, Goldman, R, Hoffmann, M, Hu, Y, Huang, Y, Kim, J Y, Kletter, D, Liquet, B, Liu, M, Mechref, Y, Meng, B, Neelamegham, S, Nguyen-Khuong, T, Nilsson, J, Pap, A, Park, G W, Parker, B L, Pegg, C L, Penninger, J M, Phung, T K, Pioch, M, Rapp, E, Sakalli, E, Sanda, M, Schulz, B L, Scott, N E, Sofronov, G, Stadlmann, J, Vakhrushev, S Y, Woo, C M, Wu, H Y, Yang, P, Ying, W, Zhang, H, Zhang, Y, Zhao, J, Zaia, J, Haslam, S M, Palmisano, G, Yoo, J S, Larson, G, Khoo, K H, Medzihradszky, K F, Kolarich, D, Packer, N H & Thaysen-Andersen, M 2021, ' Community evaluation of glycoproteomics informatics solutions reveals high-performance search strategies for serum glycopeptide analysis ', Nature Methods, vol. 18, no. 11, pp. 1304-1316 . https://doi.org/10.1038/s41592-021-01309-x
Glycoproteomics is a powerful yet analytically challenging research tool. Software packages aiding the interpretation of complex glycopeptide tandem mass spectra have appeared, but their relative performance remains untested. Conducted through the HU
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6fd1540e30b1ed9db633b6604fd71731
https://doi.org/10.1038/s41592-021-01309-x
https://doi.org/10.1038/s41592-021-01309-x