Zobrazeno 1 - 10
of 57
pro vyhledávání: '"Weflen, Andrew"'
Autor:
Alto, Neal M., Weflen, Andrew W., Rardin, Matthew J., Yarar, Defne, Lazar, Cheri S., Tonikian, Raffi, Koller, Antonius, Taylor, Susan S., Boone, Charles, Sidhu, Sachdev S., Schmid, Sandra L., Hecht, Gail A., Dixon, Jack E.
Publikováno v:
The Journal of Cell Biology, 2007 Sep . 178(7), 1265-1278.
Externí odkaz:
https://www.jstor.org/stable/30049883
Autor:
Weflen, Andrew W.1, Alto, Neal M.2, Viswanathan, Virinchipuram K.3, Hecht, Gail1 gahecht@uic.edu
Publikováno v:
Cellular Microbiology. Jul2010, Vol. 12 Issue 7, p919-929. 11p. 2 Diagrams, 5 Graphs.
Publikováno v:
Annals of the New York Academy of Sciences. May2009, Vol. 1165, p169-174. 6p. 1 Color Photograph, 3 Diagrams, 2 Graphs.
Autor:
Bradlee Nelms, Waldron, Levi, Barrera, Luis, Weflen, Andrew, Goettel, Jeremy, Guoji Guo, Montgomery, Robert, Neutra, Marian, Breault, David, Snapper, Scott, Orkin, Stuart, Bulyk, Martha, Huttenhower, Curtis, Lencer, Wayne
Brief overview of computational algorithms tested in Fig. 2. (PDF 100 kb)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c6460c905b6ffcf31703ef19526664b7
Autor:
Bradlee Nelms, Waldron, Levi, Barrera, Luis, Weflen, Andrew, Goettel, Jeremy, Guoji Guo, Montgomery, Robert, Neutra, Marian, Breault, David, Snapper, Scott, Orkin, Stuart, Bulyk, Martha, Huttenhower, Curtis, Lencer, Wayne
Robustness of CellMapper to dataset size and composition. CellMapper was applied to predict genes expressed in each of the eight brain cell types, using random subsets of (left) the Allen Brain Atlas dataset or (right) an independent expression compe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::14a755d1b93b52fd333617d92aa3877e
Autor:
Bradlee Nelms, Waldron, Levi, Barrera, Luis, Weflen, Andrew, Goettel, Jeremy, Guoji Guo, Montgomery, Robert, Neutra, Marian, Breault, David, Snapper, Scott, Orkin, Stuart, Bulyk, Martha, Huttenhower, Curtis, Lencer, Wayne
Table of query genes and expression datasets used for each cell type in this study. (PDF 97 kb)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0b89279dfd5d6ef0e3b1179c7c764994
Autor:
Bradlee Nelms, Waldron, Levi, Barrera, Luis, Weflen, Andrew, Goettel, Jeremy, Guoji Guo, Montgomery, Robert, Neutra, Marian, Breault, David, Snapper, Scott, Orkin, Stuart, Bulyk, Martha, Huttenhower, Curtis, Lencer, Wayne
Schematic of the CellMapper SVD filter and algorithm. CellMapper first performs an SVD of the microarray expression matrix to extract major components of variation (singular vectors). Then it re-weights the components of variation based on their esti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::729d1f744a85b0030abb531adcdb7399
Autor:
Bradlee Nelms, Waldron, Levi, Barrera, Luis, Weflen, Andrew, Goettel, Jeremy, Guoji Guo, Montgomery, Robert, Neutra, Marian, Breault, David, Snapper, Scott, Orkin, Stuart, Bulyk, Martha, Huttenhower, Curtis, Lencer, Wayne
Robustness of CellMapper to query gene choice; companion figure to Fig. 1b. To test the sensitivity of CellMapper to the choice of query gene, we repeated our analysis for kidney podocytes using ten distinct query genes (MAFB and the nine positive co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c09c0166c634430aaf1f09d37449dbe4
Autor:
Bradlee Nelms, Waldron, Levi, Barrera, Luis, Weflen, Andrew, Goettel, Jeremy, Guoji Guo, Montgomery, Robert, Neutra, Marian, Breault, David, Snapper, Scott, Orkin, Stuart, Bulyk, Martha, Huttenhower, Curtis, Lencer, Wayne
Algorithm development, part 2: Parameter optimization for the CellMapper SVD filter, using test searches to find tissue-enriched genes as defined in the TiGER database [55]. a Evaluation of the free parameter, alpha. The SVD filter incorporates a fre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1f1fffc983bd2cc76a1df95da09ba6ca
Autor:
Bradlee Nelms, Waldron, Levi, Barrera, Luis, Weflen, Andrew, Goettel, Jeremy, Guoji Guo, Montgomery, Robert, Neutra, Marian, Breault, David, Snapper, Scott, Orkin, Stuart, Bulyk, Martha, Huttenhower, Curtis, Lencer, Wayne
Robustness of CellMapper to bias in dataset composition. Samples were drawn from the Lukk et al. [28] dataset in order to intentionally increase or decrease bias in sample composition and the effect on algorithm performance was quantified. a Sensitiv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::caeb871a52b00416efb14e5fa02d17cd