Martinize2 and Vermouth: Unified Framework for Topology Generation

Autor: Kroon, Peter C., Grünewald, Fabian, Barnoud, Jonathan, van Tilburg, Marco, Souza, Paulo C. T., Wassenaar, Tsjerk A., Marrink, Siewert-Jan

Ongoing advances in force field and computer hardware development enable the use of molecular dynamics (MD) to simulate increasingly complex systems with the ultimate goal of reaching cellular complexity. At the same time, rational design by high-thr

Externí odkaz: http://arxiv.org/abs/2212.01191

Nucleobase-functionalized graphene nanoribbons for accurate high-speed DNA sequencing

Autor: Paulechka, Eugene, Wassenaar, Tsjerk A., Kroenlein, Kenneth, Kazakov, Andrei, Smolyanitsky, Alex

We propose a water-immersed nucleobase-functionalized suspended graphene nanoribbon as an intrinsically selective device for nucleotide detection. The proposed sensing method combines Watson-Crick selective base pairing with graphene's capacity for c

Externí odkaz: http://arxiv.org/abs/1509.04778

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Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness

Autor: Cybulski, Larisa Estefanía, Ballering, Joost, Moussatova, Anastassiia, Inda, Maria Eugenia, Vazquez, Daniela B., Wassenaar, Tsjerk A., de Mendoza, Diego, Tieleman, D. Peter, Killian, J. Antoinette

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2015 May . 112(20), 6353-6358.

Externí odkaz: https://www.jstor.org/stable/26462820

Retinyl esters form lipid droplets independently of triacylglycerol and seipin

Autor: Molenaar, Martijn R, Yadav, Kamlesh K, Toulmay, Alexandre, Wassenaar, Tsjerk A, Mari, Muriel C, Caillon, Lucie, Chorlay, Aymeric, Lukmantara, Ivan E, Haaker, Maya W, Wubbolts, Richard W, Houweling, Martin, Vaandrager, Arie Bas, Prieur, Xavier, Reggiori, Fulvio, Choudhary, Vineet, Yang, Hongyuan, Schneiter, Roger, Thiam, Abdou Rachid, Prinz, William A, Helms, J Bernd, dB&C FR-RMSC RMSC, Dep Scheikunde, Sub Biochemistry of Membranes begr1-6-12, Veterinaire biochemie, Celbiologie, IOV CCB, dB&C I&I, dB&C FR-RMSC FR

Publikováno v: The Journal of Cell Biology, 220(10):202011071. ROCKEFELLER UNIV PRESS
Journal of Cell Biology
Journal of Cell Biology, 2021, 220 (10), ⟨10.1083/jcb.202011071⟩
Journal of Cell Biology, Rockefeller University Press, 2021, 220 (10), ⟨10.1083/jcb.202011071⟩
The Journal of Cell Biology
Journal of Cell Biology, 220(10), 1. Rockefeller University Press

Molenaar et al. show that seipin does not play a role in the biogenesis of lipid droplets composed mostly or only of the neutral lipid retinyl ester, even in cells that produce triacylglycerols.
Lipid droplets store neutral lipids, primarily tri

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9a5918303642e99ebc5e72abdf8777cb
https://dspace.library.uu.nl/handle/1874/412830