Zobrazeno 1 - 10
of 119
pro vyhledávání: '"Washietl, Stefan"'
Autor:
Rose, Dominic, Hackermüller, Jörg, Washietl, Stefan, Reiche, Kristin, Hertel, Jana, Findeiß, Sven, Stadler, Peter F., Prohaska, Sonja J.
Recent experimental and computational studies have provided overwhelming evidence for a plethora of diverse transcripts that are unrelated to protein-coding genes. One subclass consists of those RNAs that require distinctive secondary structure motif
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A31952
https://ul.qucosa.de/api/qucosa%3A31952/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A31952/attachment/ATT-0/
Autor:
Backofen, Rolf, Bernhart, Stephan H., Flamm, Christoph, Fried, Claudia, Fritzsch, Guido, Hackermüller, Jörg, Hertel, Jana, Hofacker, Ivo L., Missal, Kristin, Mosig, Axel, Prohaska, Sonja J., Rose, Dominic, Stadler, Peter F., Tanzer, Andrea, Washietl, Stefan, Will, Sebastian
Starting with the discovery of microRNAs and the advent of genome‐wide transcriptomics, non‐protein‐coding transcripts have moved from a fringe topic to a central field research in molecular biology. In this contribution we review the state of
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A32161
https://ul.qucosa.de/api/qucosa%3A32161/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A32161/attachment/ATT-0/
Autor:
Hsu, Paul W.C., Huang, Hsien-Da, Hsu, Sheng-Da, Lin, Li-Zen, Tsou, Ann-Ping, Tseng, Ching-Ping, Stadler, Peter F., Washietl, Stefan, Hofacker, Ivo L.
Recent work has demonstrated that microRNAs (miRNAs) are involved in critical biological processes by suppressing the translation of coding genes. This work develops an integrated database, miRNAMap, to store the known miRNA genes, the putative miRNA
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A32947
https://ul.qucosa.de/api/qucosa%3A32947/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A32947/attachment/ATT-0/
Autor:
Bompfünewerer, Athanasius F., Flamm, Christoph, Fried, Claudia, Fritzsch, Guido, Hofacker, Ivo L., Lehmann, Jörg, Missal, Kristin, Mosig, Axel, Müller, Bettina, Prohaska, Sonja J., Stadler, Bärbel M. R., Stadler, Peter F., Tanzer, Andrea, Washietl, Stefan, Witwer, Christina
A plethora of new functions of non-coding RNAs have been discovered in past few years. In fact, RNA is emerging as the central player in cellular regulation, taking on active roles in multiple regulatory layers from transcription, RNA maturation, and
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A32169
https://ul.qucosa.de/api/qucosa%3A32169/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A32169/attachment/ATT-0/
Autor:
Washietl, Stefan, Hofacker, Ivo L., Lukasser, Melanie, Hüttenhofer, Alexander, Stadler, Peter F.
In contrast to the fairly reliable and complete annotation of the protein coding genes in the human genome, comparable information is lacking for noncoding RNAs (ncRNAs). We present a comparative screen of vertebrate genomes for structural noncoding
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A31897
https://ul.qucosa.de/api/qucosa%3A31897/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A31897/attachment/ATT-0/
We report an efficient method for detecting functional RNAs. The approach, which combines comparative sequence analysis and structure prediction, already has yielded excellent results for a small number of aligned sequences and is suitable for large-
Externí odkaz:
https://ul.qucosa.de/id/qucosa%3A31896
https://ul.qucosa.de/api/qucosa%3A31896/attachment/ATT-0/
https://ul.qucosa.de/api/qucosa%3A31896/attachment/ATT-0/
Autor:
The modeENCODE Consortium, Roy, Sushmita, Ernst, Jason, Kharchenko, Peter V., Kheradpour, Pouya, Negre, Nicolas, Eaton, Matthew L., Landolin, Jane M., Bristow, Christopher A., Ma, Lijia, Lin, Michael F., Washietl, Stefan, Arshinoff, Bradley I., Ay, Ferhat, Meyer, Patrick E., Robine, Nicolas, Washington, Nicole L., Di Stefano, Luisa, Berezikov, Eugene, Brown, Christopher D., Candeias, Rogerio, Carlson, Joseph W., Carr, Adrian, Jungreis, Irwin, Marbach, Daniel, Sealfon, Rachel, Tolstorukov, Michael Y., Will, Sebastian, Alekseyenko, Artyom A., Artieri, Carlo, Booth, Benjamin W., Brooks, Angela N., Dai, Qi, Davis, Carrie A., Duff, Michael O., Feng, Xin, Gorchakov, Andrey A., Gu, Tingting, Henikoff, Jorja G., Kapranov, Philipp, Li, Renhua, MacAlpine, Heather K., Malone, John, Minoda, Aki, Nordman, Jared, Okamura, Katsutomo, Perry, Marc, Powell, Sara K., Riddle, Nicole C., Sakai, Akiko, Samsonova, Anastasia, Sandler, Jeremy E., Schwartz, Yuri B., Sher, Noa, Spokony, Rebecca, Sturgill, David, van Baren, Marijke, Wan, Kenneth H., Yang, Li, Yu, Charles, Feingold, Elise, Good, Peter, Guyer, Mark, Lowdon, Rebecca, Ahmad, Kami, Andrews, Justen, Berger, Bonnie, Brenner, Steven E., Brent, Michael R., Cherbas, Lucy, Elgin, Sarah C. R., Gingeras, Thomas R., Grossman, Robert, Hoskins, Roger A., Kaufman, Thomas C., Kent, William, Kuroda, Mitzi I., Orr-Weaver, Terry, Perrimon, Norbert, Pirrotta, Vincenzo, Posakony, James W., Ren, Bing, Russell, Steven, Cherbas, Peter, Graveley, Brenton R., Lewis, Suzanna, Micklem, Gos, Oliver, Brian, Park, Peter J., Celniker, Susan E., Henikoff, Steven, Karpen, Gary H., Lai, Eric C., MacAlpine, David M., Stein, Lincoln D., White, Kevin P., Kellis, Manolis
Publikováno v:
Science, 2010 Dec . 330(6012), 1787-1797.
Externí odkaz:
https://www.jstor.org/stable/40986582
Autor:
Gesell Tanja, Washietl Stefan
Publikováno v:
BMC Bioinformatics, Vol 9, Iss 1, p 248 (2008)
Abstract Background Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatics. 8:33] that RNA gene prediction programs can be biased by the
Externí odkaz:
https://doaj.org/article/63ad2d753be749e2bb253d1e738b6f87
Publikováno v:
BMC Bioinformatics, Vol 9, Iss 1, p 122 (2008)
Abstract Background Evolutionary conservation of RNA secondary structure is a typical feature of many functional non-coding RNAs. Since almost all of the available methods used for prediction and annotation of non-coding RNA genes rely on this evolut
Externí odkaz:
https://doaj.org/article/18134ca5ec7f4f298f2e1a0e42d5ba80
Autor:
Hertel Jana, Reiche Kristin, Washietl Stefan, Hackermüller Jörg, Rose Dominic, Findeiß Sven, Stadler Peter F, Prohaska Sonja J
Publikováno v:
BMC Genomics, Vol 8, Iss 1, p 406 (2007)
Abstract Background Recent experimental and computational studies have provided overwhelming evidence for a plethora of diverse transcripts that are unrelated to protein-coding genes. One subclass consists of those RNAs that require distinctive secon
Externí odkaz:
https://doaj.org/article/34e54fb283e048bab6775af3a3d895b3