Efficient ancestry and mutation simulation with msprime 1.0

Autor: Franz Baumdicker, Gertjan Bisschop, Daniel Goldstein, Graham Gower, Aaron P Ragsdale, Georgia Tsambos, Sha Zhu, Bjarki Eldon, E Castedo Ellerman, Jared G Galloway, Ariella L Gladstein, Gregor Gorjanc, Bing Guo, Ben Jeffery, Warren W Kretzschumar, Konrad Lohse, Michael Matschiner, Dominic Nelson, Nathaniel S Pope, Consuelo D Quinto-Cortés, Murillo F Rodrigues, Kumar Saunack, Thibaut Sellinger, Kevin Thornton, Hugo van Kemenade, Anthony W Wohns, Yan Wong, Simon Gravel, Andrew D Kern, Jere Koskela, Peter L Ralph, Jerome Kelleher

Publikováno v: Baumdicker, F, Bisschop, G, Goldstein, D, Gower, G, Ragsdale, A P, Tsambos, G, Zhu, S, Eldon, B, Ellerman, E C, Galloway, J G, Gladstein, A L, Gorjanc, G, Guo, B, Jeffery, B, Kretzschumar, W W, Lohse, K, Matschiner, M, Nelson, D, Pope, N S, Quinto-Cortes, C D, Rodrigues, M F, Saunack, K, Sellinger, T, Thornton, K, Van Kemenade, H, Wohns, A W, Wong, Y, Gravel, S, Kern, A D, Koskela, J, Ralph, P L & Kelleher, J 2022, ' Efficient ancestry and mutation simulation with msprime 1.0 ', Genetics, vol. 220, no. 3, iyab229 . https://doi.org/10.1093/genetics/iyab229
Genetics, vol 220, iss 3
Baumdicker, F, Bisschop, G, Goldstein, D, Gower, G, Ragsdale, A P, Tsambos, G, Zhu, S, Eldon, B, Ellerman, C E, Galloway, J G, Gladstein, A L, Gorjanc, G, Guo, B, Jeffery, B, Kretzschmar, W W, Lohse, K, Matschiner, M, Nelson, D, Pope, N S, Quinto-Cortés, C D, Rodrigues, M F, Saunack, K, Sellinger, T, Thornton, K, van Kemenade, H, Wohns, A W, Wong, H Y, Gravel, S, Kern, A D, Koskela, J, Ralph, P L & Kelleher, J 2021, ' Efficient ancestry and mutation simulation with msprime 1.0 ', Genetics . https://doi.org/10.1093/genetics/iyab229
Genetics

Stochastic simulation is a key tool in population genetics, since the models involved are often analytically intractable and simulation is usually the only way of obtaining ground-truth data to evaluate inferences. Because of this, a large number of

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http://wrap.warwick.ac.uk/161035/13/WRAP-efficient-ancestry-mutation-simulation-msprime-1.0-2022.pdf