Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Warren Gish"'
Autor:
Necat Havlioglu, Jun Wang, Kazuo Fushimi, Maria D Vibranovski, Zhengyan Kan, Warren Gish, Alexei Fedorov, Manyuan Long, Jane Y Wu
Publikováno v:
PLoS ONE, Vol 2, Iss 11, p e1246 (2007)
An important level at which the expression of programmed cell death (PCD) genes is regulated is alternative splicing. Our previous work identified an intronic splicing regulatory element in caspase-2 (casp-2) gene. This 100-nucleotide intronic elemen
Externí odkaz:
https://doaj.org/article/6160c7f2ca7d40f48c05ac4ccd29bcaf
Autor:
Miao Zhang, Warren Gish
Publikováno v:
Bioinformatics. 22:13-20
Motivation: mRNA sequences and expressed sequence tags represent some of the most abundant experimental data for identifying genes and alternatively spliced products in metazoans. These transcript sequences are frequently studied by aligning them to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::07ae0db3e8e13def8d5d6efa2858ed72
https://doi.org/10.1093/bioinformatics/bti748
https://doi.org/10.1093/bioinformatics/bti748
Publikováno v:
Scopus-Elsevier
Transcription factors (TFs) are essential regulators of gene expression, and mutated TF genes have been shown to cause numerous human genetic diseases. Yet to date, no single, comprehensive database of human TFs exists. In this work, we describe the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9dda6d1d76179843a05a22b9f82a3dda
https://doi.org/10.1101/gr.2584104
https://doi.org/10.1101/gr.2584104
Autor:
Robert Baertsch, Karen A. Phelps, Lisa Cook, Joelle Kalicki, Michelle O'Laughlin, Kerry L. Bubb, David Torrents, Kristine M. Wylie, Andrew Vanbrunt, Mark E. Schaller, Dan Layman, Kelsi Scott, LaDeana W. Hillier, Marco A. Marra, Caryn Wagner-McPherson, Cindy Strong, Phil Latreille, Hui Sun, Maynard V. Olson, Holland Bradshaw-Cordum, Amanda Abbott, Robert S. Fulton, Nicolas Berkowicz, Richard Harkins, Asif T. Chinwalla, Rajinder Kaul, William E. Nash, Chad Tomlinson, Susan M. Rock, Patricia Wohldmann, Paul Flicek, Elaine R. Mardis, Catrina Strowmatt, James M. Eldred, Betty Lamar, Christopher K. Raymond, Michael C. Wendl, Lauren Bielicki, Shawn Leonard, John Douglas Mcpherson, Christine Nguyen, Jennifer Murray, Michael C. Becker, Lucinda Fulton, Amber Isak, Will Gillett, Matt Cordes, James B. Clendenning, Kymberlie H. Pepin, Mandeep Sekhon, Eric Haugen, Feiyu Du, Theresa Rohlfing, Kimberly D. Delehaunty, Nancy Miller, Amy Kozlowicz-Reilly, Eric D. Green, W. James Kent, Tamberlyn Bieri, Peer Bork, Richard K. Wilson, Patrick Minx, John Spieth, Evan E. Eichler, Shawn Iadanoto, Terrence S. Furey, Matthew E. Portnoy, Shunfang Hou, R. James, Warren Gish, Brian Schultz, Doug Johnson, Philip Ozersky, Jennifer Edwards, Stephanie L. Chissoe, Jeffrey A. Bailey, Tracie L. Miner, Jason Maas, Andrea Holmes, Sandra W. Clifton, Sara Jaeger, Tina Graves, Ruth Levy, Joseph A. Bedell, Ginger A. Fewell, Mikita Suyama, Shiaw-Pyng Yang, Sean R. Eddy, Rebecca S. Walker, Aye-Mon Tin-Wollam, Hui Du, Evan Keibler, Matthew T. Hickenbotham, Sara Dauphin-Kohlberg, Robert H. Waterston, Yang Zhou, Stephanie Andrews, Johar Ali, John W. Wallis, Michael R. Brent, Rachel Maupin, Donald Williams, Elizabeth Simms, Laura Courtney, Anthony R. Harris, Jeffrey Woessner, Joanne O. Nelson
Publikováno v:
Nature. 424:157-164
Human chromosome 7 has historically received prominent attention in the human genetics community, primarily related to the search for the cystic fibrosis gene and the frequent cytogenetic changes associated with various forms of cancer. Here we prese
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c29b60c5416304ab9eb59426f65e8b3b
https://doi.org/10.1038/nature01782
https://doi.org/10.1038/nature01782
Publikováno v:
Nucleic Acids Research. 31:3795-3798
Since 1995, the WU-BLAST programs (http://blast.wustl.edu) have provided a fast, flexible and reliable method for similarity searching of biological sequence databases. The software is in use at many locales and web sites. The European Bioinformatics
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6955b789c8742e9939bb549cfb729ff7
https://doi.org/10.1093/nar/gkg573
https://doi.org/10.1093/nar/gkg573
Publikováno v:
Genome Research. 12:1837-1845
The expressed sequence tag (EST) collection in dbEST provides an extensive resource for detecting alternative splicing on a genomic scale. Using genomically aligned ESTs, a computational tool (TAP) was used to identify alternative splice patterns for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::496b70160a322e2c9863425d267cfb55
https://doi.org/10.1101/gr.764102
https://doi.org/10.1101/gr.764102
Publikováno v:
Genome Research. 11:889-900
With the availability of a nearly complete sequence of the human genome, aligning expressed sequence tags (EST) to the genomic sequence has become a practical and powerful strategy for gene prediction. Elucidating gene structure is a complex problem
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d04bdb544e3724051cb0a2a4c5499bd
https://doi.org/10.1101/gr.155001
https://doi.org/10.1101/gr.155001
Autor:
Pui-Yan Kwok, Nathan O. Stitziel, Ian F Korf, Zhijie Gu, Gabor T. Marth, Warren Gish, Mark Yandell, Hamideh Zakeri, LaDeana W. Hillier, Raymond T. Yeh
Publikováno v:
Nature Genetics. 23:452-456
Single-nucleotide polymorphisms (SNPs) are the most abundant form of human genetic variation and a resource for mapping complex genetic traits 1 . The large volume of data produced by high-throughput sequencing projects is a rich and largely untapped
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::23702c6fc14fa2bae634b057102ebdc8
https://doi.org/10.1038/70570
https://doi.org/10.1038/70570
Autor:
DuBuque T, Bonaldo Mf, Tracy Rohlfing, Gregory G. Lennon, Stephanie L. Chissoe, Morris M, Le N, Chiapelli B, Trevaskis E, LaDeana W. Hillier, Underwood K, Bento Soares M, Elaine R. Mardis, Nicole Dietrich, Marco A. Marra, Tamara A. Kucaba, Hultman M, Wohldman P, Lacy M, Anthony Favello, J. Parsons, Warren Gish, Schellenberg K, Hawkins M, Prange C, Robert H. Waterston, Thierry-Meg J, Rifkin L, Richard K. Wilson, Michael C. Becker, Le M, Moore B, Tan F
Publikováno v:
Genome Research. 6:807-828
We report the generation of 319,311 single-pass sequencing reactions (known as expressed sequence tags, or ESTs) obtained from the 5' and 3' ends of 194,031 human cDNA clones. Our goal has been to obtain tag sequences from many different genes and to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad9eb64b357c06aecb18b08dd2da2233
https://doi.org/10.1101/gr.6.9.807
https://doi.org/10.1101/gr.6.9.807
Publikováno v:
Nature Genetics. 6:119-129
Sequence similarity search programs are versatile tools for the molecular biologist, frequently able to identify possible DNA coding regions and to provide clues to gene and protein structure and function. While much attention had been paid to the pr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f02c8a22c259cb930033f19d896c7349
https://doi.org/10.1038/ng0294-119
https://doi.org/10.1038/ng0294-119