Decoding the epitranscriptional landscape from native RNA sequences.

Autor: Jenjaroenpun P; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Wongsurawat T; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Wadley TD; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Wassenaar TM; Molecular Microbiology and Genomics Consultants, Zotzenheim, Germany., Liu J; Department of Chemistry, Department of Biochemistry and Molecular Biology, Howard Hughes Medical Institute, The University of Chicago, Chicago, IL 60637, USA., Dai Q; Department of Chemistry, Department of Biochemistry and Molecular Biology, Howard Hughes Medical Institute, The University of Chicago, Chicago, IL 60637, USA., Wanchai V; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Akel NS; Department of Physiology and Biophysics, College of Medicine, The University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Jamshidi-Parsian A; Department of Radiation Oncology, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Franco AT; Department of Physiology and Biophysics, College of Medicine, The University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Boysen G; Department of Environmental and Occupational Health, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Jennings ML; Department of Physiology and Biophysics, College of Medicine, The University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., Ussery DW; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA., He C; Department of Chemistry, Department of Biochemistry and Molecular Biology, Howard Hughes Medical Institute, The University of Chicago, Chicago, IL 60637, USA., Nookaew I; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.; Department of Physiology and Biophysics, College of Medicine, The University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2021 Jan 25; Vol. 49 (2), pp. e7.

Mitochondrial transcriptome of Candida albicans in flagranti — direct RNA sequencing reveals a new layer of information.

Autor: Piątkowski, Jakub¹ (AUTHOR) j.piatkowski@uw.edu.pl, Koźluk, Kacper¹ (AUTHOR), Golik, Paweł^1,2 (AUTHOR)

Publikováno v: BMC Genomics. 9/14/2024, Vol. 25 Issue 1, p1-20. 20p.

Rapid Sequencing of Multiple RNA Viruses in Their Native Form.

Autor: Wongsurawat T; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States., Jenjaroenpun P; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States., Taylor MK; Department of Microbiology, Immunology and Biochemistry, The University of Tennessee Health Science Center, Memphis, TN, United States., Lee J; Department of Microbiology, Immunology and Biochemistry, The University of Tennessee Health Science Center, Memphis, TN, United States., Tolardo AL; Virology Research Center, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil., Parvathareddy J; Regional Biocontainment Laboratory, University of Tennessee Health Science Center, Memphis, TN, United States., Kandel S; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States.; Department of Bioinformatics, University of Arkansas at Little Rock, Little Rock, AR, United States., Wadley TD; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States., Kaewnapan B; Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand., Athipanyasilp N; Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand., Skidmore A; Department of Microbiology and Immunology, University of Louisville, Louisville, KY, United States., Chung D; Department of Microbiology and Immunology, University of Louisville, Louisville, KY, United States., Chaimayo C; Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand., Whitt M; Department of Microbiology, Immunology and Biochemistry, The University of Tennessee Health Science Center, Memphis, TN, United States., Kantakamalakul W; Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand., Sutthent R; Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand., Horthongkham N; Department of Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand., Ussery DW; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States.; Department of Physiology and Biophysics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States., Jonsson CB; Department of Microbiology, Immunology and Biochemistry, The University of Tennessee Health Science Center, Memphis, TN, United States., Nookaew I; Department of Biomedical Informatics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States.; Department of Physiology and Biophysics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, AR, United States.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2019 Feb 25; Vol. 10, pp. 260. Date of Electronic Publication: 2019 Feb 25 (Print Publication: 2019).

Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing.

Autor: Maestri, Simone¹ (AUTHOR), Furlan, Mattia¹ (AUTHOR), Mulroney, Logan^1,2,3 (AUTHOR), Tarrero, Lucia Coscujuela¹ (AUTHOR), Ugolini, Camilla¹ (AUTHOR), Pozza, Fabio Dalla¹ (AUTHOR), Leonardi, Tommaso¹ (AUTHOR), Birney, Ewan² (AUTHOR), Nicassio, Francesco¹ (AUTHOR) mattia.pelizzola@iit.it, Pelizzola, Mattia^1,4 (AUTHOR) mattia.pelizzola@iit.it

Publikováno v: Briefings in Bioinformatics. Mar2024, Vol. 25 Issue 2, p1-13. 13p.

Concepts and methods for transcriptome-wide prediction of chemical messenger RNA modifications with machine learning.

Autor: Mateos, Pablo Acera^1,2,3 (AUTHOR), Zhou, You^4,5 (AUTHOR), Zarnack, Kathi^4,5 (AUTHOR) kathi.zarnack@bmls.de, Eyras, Eduardo^1,2,3 (AUTHOR) kathi.zarnack@bmls.de

Publikováno v: Briefings in Bioinformatics. May2023, Vol. 24 Issue 3, p1-14. 14p.