MOESM7 of The impact of RNA extraction method on accurate RNA sequencing from formalin-fixed paraffin-embedded tissues

Autor: Marczyk, Michal, Chunxiao Fu, Lau, Rosanna, Du, Lili, Trevarton, Alexander, Sinn, Bruno, Gould, Rebekah, Pusztai, Lajos, Hatzis, Christos, W. Symmans

Additional file 7: Figure S4. Concordance correlation coefficient (CCC) summarized per chromosome (A) and genomic position within each chromosome (B).

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a88931b3547c31840007f451be82e97e

The MicroArray Quality Control (MAQC)-IIII study of common practices for the development and validation of microarray-based predictive models

Autor: L. SHI, G. CAMPBELL, W. JONES, F. CAMPAGNE, Z. WEN, S. WALKER, Z. SU, T. CHU, F. GOODSAID, L. PUSZTAI, J. SHAUGHNESSY, A. OBERTHUER, R. THOMAS, R. PAULES, M. FIELDEN, B. BARLOGIE, W. CHEN, P. DU, M. FISCHER, C. FURLANELLO, B. GALLAS, X. GE, D. MEGHERBI, W. SYMMANS, M. WANG, J. ZHANG, H. BITTER, B. BRORS, P. BUSHEL, M. BYLESJO, M. CHEN, J. CHENG, J. CHOU, T. DAVISON, M. DELORENZI, Y. DENG, V. DEVANARAYAN, D. DIX, J. DOPAZO, K. DORFF, F. ELLOUMI, J. FAN, S. FAN, X. FAN, H. FANG, N. GONZALUDO, K. HESS, H. HONG, J. HUAN, R. IRIZARRY, R. JUDSON, D. JURAEVA, S. LABABIDI, C. LAMBERT, L. LI, Y. LI, Z. LI, S. LIN, G. LIU, E. LOBENHOFER, J. LUO, W. LUO, M. MCCALL, Y. NIKOLSKY, G. PENNELLO, R. PERKINS, R. PHILIP, V. POPOVICI, N. PRICE, F. QIAN, A. SCHERER, T. SHI, W. SHI, J. SUNG, D. THIERRY-MIEG, J. THIERRY-MIEG, V. THODIMA, J. TRYGG, L. VISHNUVAJJALA, S. WANG, J. WU, Y. WU, Q. XIE, W. YOUSEF, L. ZHANG, X. ZHANG, S. ZHONG, Y. ZHOU, S. ZHU, D. ARASAPPAN, W. BAO, A. LUCAS, F. BERTHOLD, R. BRENNAN, A. BUNESS, J. CATALANO, C. CHANG, R. CHEN, Y. CHENG, J. CUI, W. CZIKA, F. DEMICHELIS, X. DENG, D. DOSYMBEKOV, R. EILS, Y. FENG, J. FOSTEL, S. FULMER-SMENTEK, J. FUSCOE, L. GATTO, W. GE, D. GOLDSTEIN, L. GUO, D. HALBERT, J. HAN, S. HARRIS, C. HATZIS, D. HERMAN, J. HUANG, R. JENSEN, R. JIANG, C. JOHNSON, G. JURMAN, Y. KAHLERT, S. KHUDER, M. KOHL, J. LI, M. LI, Q. LI, S. LI, J. LIU, Y. LIU, Z. LIU, L. MENG, M. MADERA, F. MARTINEZ-MURILLO, I. MEDINA, J. MEEHAN, K. MICLAUS, R. MOFFITT, D. MONTANER, P. MUKHERJEE, G. MULLIGAN, P. NEVILLE, T. NIKOLSKAYA, B. NING, G. PAGE, J. PARKER, R. PARRY, X. PENG, R. PETERSON, J. PHAN, B. QUANZ, Y. REN, S. RICCADONNA, A. ROTER, F. SAMUELSON, M. SCHUMACHER, J. SHAMBAUGH, Q. SHI, R. SHIPPY, S. SI, A. SMALTER, C. SOTIRIOU, M. SOUKUP, F. STAEDTLER, G. STEINER, T. STOKES, Q. SUN, P. TAN, R. TANG, Z. TEZAK, B. THORN, M. TSYGANOVA, Y. TURPAZ, S. VEGA, R. VISINTAINER, J. VON FRESE, C. WANG, E. WANG, J. WANG, W. WANG, F. WESTERMANN, J. WILLEY, M. WOODS, S. WU, N. XIAO, J. XU, L. XU, L. YANG, X. ZENG, M. ZHANG, C. ZHAO, R. PURI, U. SCHERF, W. TONG, R. WOLFINGER, MAQC Consortium

Publikováno v: NATURE BIOTECHNOLOGY
r-CIPF. Repositorio Institucional Producción Científica del Centro de Investigación Principe Felipe (CIPF)
instname
r-CIPF: Repositorio Institucional Producción Científica del Centro de Investigación Principe Felipe (CIPF)
Centro de Investigación Principe Felipe (CIPF)

Gene expression data from microarrays are being applied to predict preclinical and clinical endpoints, but the reliability of these predictions has not been established. In the MAQC-II project, 36 independent teams analyzed six microarray data sets t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::0eb81fd072db5db81e074b5d3c89b532
https://fundanet.cipf.es/Publicaciones/ProdCientif/PublicacionFrw.aspx?id=2694

Is It Too Soon To Start Reporting HER2 Genetic Heterogeneity?

Autor: Constance Albarracin, Mary E. Edgerton, Michael Z. Gilcrease, Lei Huo, Savitri Krishnamurthy, Lavinia P. Middleton, Erika Resetkova, Aysegul A. Sahin, Nour Sneige, W. Symmans Fraser, Yun Wu

Publikováno v: Archives of Pathology & Laboratory Medicine. 134:162-163

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::19057cfbea447249014f34ea78e70c7a
https://doi.org/10.5858/134.2.162.b

The Molecular Anatomy of Breast Cancer Stroma; Independent Prognostic Role in ER-Positive and ER-Negative Cancers

Autor: G. Bianchini, R. Alvarez, Y. Qi, C. Hatzis, T. Iwamoto, C. Shiang, C. Coutant, G. Hortobagyi, W. Symmans, L. Pusztai

Publikováno v: Cancer Research. 69:105-105

BackgroundIn this paper we examine the various molecular components of a breast cancer stromal gene signature and correlate these with clinical phenotype and outcome including prognosis and response to preoperative chemotherapy.MethodsWe compared Aff

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::a3a64dfd020b4d9488e935713f8e670a
https://doi.org/10.1158/0008-5472.sabcs-09-105

Clinical Subtype-Derived p53 Gene Signature Is Predictive of Prognosis and Response to Chemotherapy in ER-Positive but Not in ER-Negative Breast Cancers

Autor: L. Pusztai, R. Rouzier, Y. Qi, J. Lehmann-Che, G. Bianchini, T. Iwamoto, W. Symmans, F. Andre, H. de The, C. Coutant

Publikováno v: Cancer Research. 69:6122-6122

BackgroundBreast cancer is a collection of molecularly distinct neoplastic diseases and therefore, we hypothesized that p53 gene mutations may lead to different transcriptional changes in the different molecular subtypes and these may translate into

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2cf8b445d92932fcb74389697f77c5c4
https://doi.org/10.1158/0008-5472.sabcs-09-6122