Zobrazeno 1 - 10
of 108
pro vyhledávání: '"W James Kent"'
Autor:
Hiram Clawson, Brian T. Lee, Brian J. Raney, Galt P. Barber, Jonathan Casper, Mark Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S. Hinrichs, Christopher M. Lee, Luis R. Nassar, Gerardo Perez, Brittney Wick, Daniel Schmelter, Matthew L. Speir, Joel Armstrong, Ann S. Zweig, Robert M. Kuhn, Bogdan M. Kirilenko, Michael Hiller, David Haussler, W. James Kent, Maximilian Haeussler
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-8 (2023)
Abstract Interactive graphical genome browsers are essential tools in genomics, but they do not contain all the recent genome assemblies. We create Genome Archive (GenArk) collection of UCSC Genome Browsers from NCBI assemblies. Built on our establis
Externí odkaz:
https://doaj.org/article/8226e568dade4fd09eb95b95cb4952fa
Autor:
Jason D. Fernandes, Armando Zamudio-Hurtado, Hiram Clawson, W. James Kent, David Haussler, Sofie R. Salama, Maximilian Haeussler
Publikováno v:
Mobile DNA, Vol 11, Iss 1, Pp 1-12 (2020)
Abstract Background Nearly half the human genome consists of repeat elements, most of which are retrotransposons, and many of which play important biological roles. However repeat elements pose several unique challenges to current bioinformatic analy
Externí odkaz:
https://doaj.org/article/57d4074818574439ab6825cf48f69a28
Autor:
Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket A. Sloan, Timothy Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, Marcus Ho, Stuart Miyasato, Matt Simison, Forrest Tanaka, Yunhai Luo, Ian Whaling, Eurie L. Hong, Brian T. Lee, Richard Sandstrom, Eric Rynes, Jemma Nelson, Andrew Nishida, Alyssa Ingersoll, Michael Buckley, Mark Frerker, Daniel S Kim, Nathan Boley, Diane Trout, Alex Dobin, Sorena Rahmanian, Dana Wyman, Gabriela Balderrama-Gutierrez, Fairlie Reese, Neva C. Durand, Olga Dudchenko, David Weisz, Suhas S. P. Rao, Alyssa Blackburn, Dimos Gkountaroulis, Mahdi Sadr, Moshe Olshansky, Yossi Eliaz, Dat Nguyen, Ivan Bochkov, Muhammad Saad Shamim, Ragini Mahajan, Erez Aiden, Tom Gingeras, Simon Heath, Martin Hirst, W. James Kent, Anshul Kundaje, Ali Mortazavi, Barbara Wold, J. Michael Cherry
The Encyclopedia of DNA elements (ENCODE) project is a collaborative effort to create a comprehensive catalog of functional elements in the human genome. The current database comprises more than 19000 functional genomics experiments across more than
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f3ede3b75e1612917e82c16d5ca40cfb
https://doi.org/10.1101/2023.04.04.535623
https://doi.org/10.1101/2023.04.04.535623
Autor:
Luis R Nassar, Galt P Barber, Anna Benet-Pagès, Jonathan Casper, Hiram Clawson, Mark Diekhans, Clay Fischer, Jairo Navarro Gonzalez, Angie S Hinrichs, Brian T Lee, Christopher M Lee, Pranav Muthuraman, Beagan Nguy, Tiana Pereira, Parisa Nejad, Gerardo Perez, Brian J Raney, Daniel Schmelter, Matthew L Speir, Brittney D Wick, Ann S Zweig, David Haussler, Robert M Kuhn, Maximilian Haeussler, W James Kent
Publikováno v:
Nucleic Acids Res. 51, D1188–D1195 (2023)
Nucleic acids research, vol 51, iss D1
Nucleic acids research, vol 51, iss D1
The UCSC Genome Browser (https://genome.ucsc.edu) is an omics data consolidator, graphical viewer, and general bioinformatics resource that continues to serve the community as it enters its 23rd year. This year has seen an emphasis in clinical data,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::017814974d408c9c131fcfc5b62b4eff
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=66861
https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=66861
Autor:
Maximilian Haeussler, Jairo Navarro Gonzalez, Pranav Muthuraman, Clay Fischer, Angie S. Hinrichs, Jonathan Casper, Beagan Nguy, Hiram Clawson, Kate R. Rosenbloom, Luis R Nassar, Ann S. Zweig, Tiana Pereira, Christopher Lee, Robert M. Kuhn, W. James Kent, Matthew L. Speir, Brittney D Wick, Galt P. Barber, Brian T. Lee, Daniel Schmelter, David Haussler, Anna Benet-Pagès, Gerardo Perez, Brian J. Raney, Mark Diekhans
Publikováno v:
Nucleic acids research, vol 50, iss D1
Nucleic Acids Research
Nucleic Acids Research
The UCSC Genome Browser, https://genome.ucsc.edu, is a graphical viewer for exploring genome annotations. The website provides integrated tools for visualizing, comparing, analyzing, and sharing both publicly available and user-generated genomic data
Autor:
W. James Kent, Maximilian Haeussler, Jason D Fernandes, David Haussler, Armando Zamudio-Hurtado, Sofie R. Salama, Hiram Clawson
Publikováno v:
Mobile DNA, Vol 11, Iss 1, Pp 1-12 (2020)
Mobile DNA, vol 11, iss 1
Mobile DNA
Mobile DNA, vol 11, iss 1
Mobile DNA
Background Nearly half the human genome consists of repeat elements, most of which are retrotransposons, and many of which play important biological roles. However repeat elements pose several unique challenges to current bioinformatic analyses and v
Autor:
Lucas Seninge, W. James Kent, Alex A. Pollen, Pablo Moreno, Brian J. Raney, Nikolay S. Markov, Matthew L. Speir, Maximilian Haeussler, Aparna Bhaduri, Irene Papatheodorou, Tomasz J. Nowakowski
Publikováno v:
Bioinformatics (Oxford, England), vol 37, iss 23
Bioinformatics
Bioinformatics
Summary As the use of single-cell technologies has grown, so has the need for tools to explore these large, complicated datasets. The UCSC Cell Browser is a tool that allows scientists to visualize gene expression and metadata annotation distribution
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7864dbb2a6a97ad44dee5cb373e9ecf
https://escholarship.org/uc/item/021868s7
https://escholarship.org/uc/item/021868s7
Autor:
Brian T. Lee, Luis R Nassar, Daniel Schmelter, Jairo Navarro Gonzalez, Kate R. Rosenbloom, Jonathan Casper, Christopher Lee, W. James Kent, Hiram Clawson, Robert M. Kuhn, Anna Benet-Pagès, Gerardo Perez, Brian J. Raney, Ann S. Zweig, Maximillian Haeussler
The UCSC Genome Browser has been an important tool for genomics and clinical genetics since the sequence of the human genome was first released in 2000. As it has grown in scope to display more types of data it has also grown more complicated. The da
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e9d0258daf0f72d6ac15733e889e64a7
https://doi.org/10.22541/au.162547326.67836758/v1
https://doi.org/10.22541/au.162547326.67836758/v1
Autor:
Angie S. Hinrichs, Galt P. Barber, David Gibson, Ann S. Zweig, Brian J. Raney, Mark Diekhans, Matthew L. Speir, Cath Tyner, W. James Kent, Maximilian Haeussler, Jairo Navarro Gonzalez, Kate R. Rosenbloom, Jonathan Casper, Brian T. Lee, Christopher Lee, Robert M. Kuhn, Hiram Clawson, David Haussler
Publikováno v:
Nucleic acids research, vol 47, iss D1
Nucleic Acids Research
Nucleic Acids Research
The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and featur
Autor:
Conner C Powell, Kate R. Rosenbloom, Luis R Nassar, Angie S. Hinrichs, Jonathan Casper, Brian T. Lee, Ann S. Zweig, David Haussler, Brian J. Raney, Christopher Lee, Matthew L. Speir, Alastair C. Fyfe, Jason D Fernandes, Anna Benet-Pagès, W. James Kent, Nathan Maulding, Mark Diekhans, Robert M. Kuhn, Maximilian Haeussler, Jairo Navarro Gonzalez, Galt P. Barber, Hiram Clawson, Daniel Schmelter
Publikováno v:
Nucleic acids research, vol 49, iss D1
Nucleic Acids Research
Nucleic Acids Research
For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome annotations to the research community. As the field of genomics grows and more data become availabl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0f16f8229646e91a581bfa7ddf0c4057
https://escholarship.org/uc/item/0qk9n5s0
https://escholarship.org/uc/item/0qk9n5s0