Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Autor: Munk, Patrick, Brinch, Christian, Møller, Frederik Duus, Petersen, Thomas N., Hendriksen, Rene S., Seyfarth, Anne Mette, Kjeldgaard, Jette S., Svendsen, Christina Aaby, van Bunnik, Bram, Berglund, Fanny, Bego, Artan, Power, Pablo, Rees, Catherine, Lambrinidis, Dionisia, Neilson, Elizabeth Heather Jakobsen, Gibb, Karen, Coventry, Kris, Collignon, Peter, Cassar, Susan, Allerberger, Franz, Begum, Anowara, Hossain, Zenat Zebin, Worrell, Carlon, Vandenberg, Olivier, Pieters, Ilse, Victorien, Dougnon Tamègnon, Gutierrez, Angela Daniela Salazar, Soria, Freddy, Grujić, Vesna Rudić, Mazalica, Nataša, Rahube, Teddie O., Tagliati, Carlos Alberto, Rodrigues, Dalia, Oliveira, Guilherme, de Souza, Larissa Camila Ribeiro, Ivanov, Ivan, Juste, Bonkoungou Isidore, Oumar, Traoré, Sopheak, Thet, Vuthy, Yith, Ngandijo, Antoinette, Nzouankeu, Ariane, Olivier, Ziem A. Abah Jacques, Yost, Christopher K., Kumar, Pratik, Brar, Satinder Kaur, Tabo, Djim-Adjim, Adell, Aiko D., Paredes-Osses, Esteban, Martinez, Maria Cristina, Cuadros-Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Lau, Lok Ting, Chung, Teresa, Jiao, Xiaoyang, Yu, Yongjie, JiaYong, Zhao, Morales, Johan F. Bernal, Valencia, Maria Fernanda, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Deogratias, Zozo Nyarukweba, Elsborg, Bodil, Hansen, Lisbeth Truelstrup, Jensen, Pernille Erland, Abouelnaga, Mohamed, Salem, Mohamed Fathy, Koolmeister, Marliin, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Le Guyader, Soizick, Schaeffer, Julien, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Schubert, Sara, Hesse, Sina, Berendonk, Thomas U., Saba, Courage Kosi Setsoafia, Mohammed, Jibril, Feglo, Patrick Kwame, Banu, Regina Ama, Kotzamanidis, Charalampos, Lytras, Efthymios, Lickes, Sergio A., Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Ballal, Mamatha, Bangera, Sohan Rodney, Fani, Fereshteh, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran-Gilad, Jacob, Battisti, Antonio, Diaconu, Elena Lavinia, Corno, Gianluca, Di Cesare, Andrea, Alba, Patricia, Hisatsune, Junzo, Yu, Liansheng, Kuroda, Makoto, Sugai, Motoyuki, Kayama, Shizuo, Shakenova, Zeinegul, Kiiyukia, Ciira, Ng’eno, Eric, Raka, Lul, Jamil, Kazi, Fakhraldeen, Saja Adel, Alaati, Tareq, Bērziņš, Aivars, Avsejenko, Jeļena, Kokina, Kristina, Streikisa, Madara, Bartkevics, Vadims, Matar, Ghassan M., Daoud, Ziad, Pereckienė, Asta, Butrimaite-Ambrozeviciene, Ceslova, Penny, Christian, Bastaraud, Alexandra, Rasolofoarison, Tiavina, Collard, Jean-Marc, Samison, Luc Hervé, Andrianarivelo, Mala Rakoto, Banda, Daniel Lawadi, Amin, Arshana, Rajandas, Heraa, Parimannan, Sivachandran, Spiteri, David, Haber, Malcolm Vella, Santchurn, Sunita J., Vujacic, Aleksandar, Djurovic, Dijana, Bouchrif, Brahim, Karraouan, Bouchra, Vubil, Delfino Carlos, Pal, Pushkar, Schmitt, Heike, van Passel, Mark, Jeunen, Gert-Jan, Gemmell, Neil, Chambers, Stephen T., Mendoza, Fania Perez, Huete-Pιrez, Jorge, Vilchez, Samuel, Ahmed, Akeem Olayiwola, Adisa, Ibrahim Raufu, Odetokun, Ismail Ayoade, Fashae, Kayode, Sørgaard, Anne-Marie, Wester, Astrid Louise, Ryrfors, Pia, Holmstad, Rune, Mohsin, Mashkoor, Hasan, Rumina, Shakoor, Sadia, Gustafson, Natalie Weiler, Schill, Claudia Huber, Rojas, Maria Luz Zamudio, Velasquez, Jorge Echevarria, Magtibay, Bonifacio B., Catangcatang, Kris, Sibulo, Ruby, Yauce, Felipe Campos, Wasyl, Dariusz, Manaia, Celia, Rocha, Jaqueline, Martins, Jose, Álvaro, Pedro, Di Yoong Wen, Doris, Shin, Hanseob, Hur, Hor-Gil, Yoon, Sukhwan, Bosevska, Golubinka, Kochubovski, Mihail, Cojocaru, Radu, Burduniuc, Olga, Hong, Pei-Ying, Perry, Meghan Rose, Gassama, Amy, Radosavljevic, Vladimir, Tay, Moon Y. F., Zuniga-Montanez, Rogelio, Wuertz, Stefan, Gavačová, Dagmar, Pastuchová, Katarína, Truska, Peter, Trkov, Marija, Keddy, Karen, Esterhuyse, Kerneels, Song, Min Joon, Quintela-Baluja, Marcos, Lopez, Mariano Gomez, Cerdà-Cuéllar, Marta, Perera, R.R.D.P., Bandara, N.K.B.K.R.G.W., Premasiri, H.I., Pathirage, Sujatha, Charlemagne, Kareem, Rutgersson, Carolin, Norrgren, Leif, Örn, Stefan, Boss, Renate, Van der Heijden, Tanja, Hong, Yu-Ping, Kumburu, Happiness Houka, Mdegela, Robinson Hammerthon, Hounmanou, Yaovi Mahuton Gildas, Chonsin, Kaknokrat, Suthienkul, Orasa, Thamlikitkul, Visanu, de Roda Husman, Ana Maria, Bidjada, Bawimodom, Njanpop-Lafourcade, Berthe-Marie, Nikiema-Pessinaba, Somtinda Christelle, Levent, Belkis, Kurekci, Cemil, Ejobi, Francis, Kalule, John Bosco, Thomsen, Jens, Obaidi, Ouidiane, Jassim, Laila Mohamed, Moore, Andrew, Leonard, Anne, Graham, David W., Bunce, Joshua T., Zhang, Lihong, Gaze, William H., Lefor, Brett, Capone, Drew, Sozzi, Emanuele, Brown, Joe, Meschke, John Scott, Sobsey, Mark D., Davis, Michael, Beck, Nicola Koren, Sukapanpatharam, Pardi, Truong, Phuong, Lilienthal, Ronald, Kang, Sanghoon, Wittum, Thomas E., Rigamonti, Natalia, Baklayan, Patricia, Van, Chinh Dang, Tran, Doan Minh Nguyen, Do Phuc, Nguyen, Kwenda, Geoffrey, Larsson, D. G. Joakim, Koopmans, Marion, Woolhouse, Mark, Aarestrup, Frank M.

Publikováno v: Nature Communications, 13(1):7251. Nature Publishing Group
Nature Communications
Nature Communications (2041-1723) (Springer Science and Business Media LLC), 2022-12, Vol. 13, N. 1, P. 7251 (16p.)
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J S, Svendsen, C A, van Bunnik, B, Berglund, F, Global, S S C, Larsson, D G J, Koopmans, M, Woolhouse, M & Aarestrup, F M 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, no. 1, 7251 . https://doi.org/10.1038/s41467-022-34312-7
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J S, Svendsen, C A, van Bunnik, B, Berglund, F, Bego, A, Power, P, Rees, C, Lambrinidis, D, Neilson, E H J, Gibb, K, Coventry, K, Collignon, P, Cassar, S, Allerberger, F, Begum, A, Hossain, Z Z, Worrell, C, Vandenberg, O, Pieters, I, Victorien, D T, Gutierrez, A D S, Soria, F, Grujić, V R, Mazalica, N, Rahube, T O, Tagliati, C A, Rodrigues, D, Oliveira, G, de Souza, L C R, Ivanov, I, Juste, B I, Oumar, T, Sopheak, T, Vuthy, Y, Ngandijo, A, Nzouankeu, A, Olivier, Z A A J, Yost, C K, Hansen, L T, Jensen, P E, Parimannan, S, Hounmanou, Y M G, Thomsen, J, Aarestrup, F M & Global Sewage Surveillance Consortium 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, 7251 . https://doi.org/10.1038/s41467-022-34312-7
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J, Svendsen, C A, van Bunnik, B A D, Berglund, F, Larsson, D G J, Koopmans, M P G & Woolhouse, M & Aarestrup, F M 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, 7251 . https://doi.org/10.1038/s41467-022-34312-7

Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop sustainable strategies combatting this threat. Here,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::303f29efecb5b8304deef73449e4f6cd
https://pure.eur.nl/en/publications/a8b1eb7a-a1f6-4d66-aec6-d86b000f9453

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Autor: Hendriksen, Rene S., Munk, Patrick, Njage, Patrick, van Bunnik, Bram, McNally, Luke, Lukjancenko, Oksana, Röder, Timo, Nieuwenhuijse, David, Pedersen, Susanne Karlsmose, Kjeldgaard, Jette, Kaas, Rolf S., Clausen, Philip Thomas Lanken Conradsen, Vogt, Josef Korbinian, Leekitcharoenphon, Pimlapas, van de Schans, Milou G.M., Zuidema, Tina, de Roda Husman, Ana Maria, Rasmussen, Simon, Petersen, Bent, Bego, Artan, Rees, Catherine, Cassar, Susan, Coventry, Kris, Collignon, Peter, Allerberger, Franz, Rahube, Teddie O., Oliveira, Guilherme, Ivanov, Ivan, Vuthy, Yith, Sopheak, Thet, Yost, Christopher K., Ke, Changwen, Zheng, Huanying, Baisheng, Li, Jiao, Xiaoyang, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Jergović, Matijana, Hrenovic, Jasna, Karpíšková, Renáta, Villacis, Jose Eduardo, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Saba, Courage Kosi Setsoafia, Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Alebouyeh, Masoud, Morris, Dearbhaile, Cormican, Martin, O’Connor, Louise, Moran-Gilad, Jacob, Alba, Patricia, Battisti, Antonio, Shakenova, Zeinegul, Kiiyukia, Ciira, Ng’eno, Eric, Raka, Lul, Avsejenko, Jeļena, Bērziņš, Aivars, Bartkevics, Vadims, Penny, Christian, Rajandas, Heraa, Parimannan, Sivachandran, Haber, Malcolm Vella, Pal, Pushkar, Jeunen, Gert Jan, Gemmell, Neil, Fashae, Kayode, Holmstad, Rune, Hasan, Rumina, Shakoor, Sadia, Rojas, Maria Luz Zamudio, Wasyl, Dariusz, Bosevska, Golubinka, Kochubovski, Mihail, Radu, Cojocaru, Gassama, Amy, Radosavljevic, Vladimir, Wuertz, Stefan, Zuniga-Montanez, Rogelio, Tay, Moon Y.F., Gavačová, Dagmar, Pastuchova, Katarina, Truska, Peter, Trkov, Marija, Esterhuyse, Kerneels, Keddy, Karen, Cerdà-Cuéllar, Marta, Pathirage, Sujatha, Norrgren, Leif, Örn, Stefan, Larsson, D. G.Joakim, Heijden, Tanja Van der, Kumburu, Happiness Houka, Sanneh, Bakary, Bidjada, Pawou, Njanpop-Lafourcade, Berthe Marie, Nikiema-Pessinaba, Somtinda Christelle, Levent, Belkis, Meschke, John Scott, Beck, Nicola Koren, Van, Chinh Dang, Tran, Doan Minh Nguyen, Kwenda, Geoffrey, Tabo, Djim adjim, Wester, Astrid Louise, Cuadros-Orellana, Sara, Amid, Clara, Cochrane, Guy, Sicheritz-Ponten, Thomas, Schmitt, Heike, Alvarez, Jorge Raul Matheu, Aidara-Kane, Awa, Pamp, Sünje J., Lund, Ole, Hald, Tine, Woolhouse, Mark, Koopmans, Marion P., Vigre, Håkan, Petersen, Thomas Nordahl, Aarestrup, Frank M., Sub RIVM, dIRAS RA-I&I RA, One Health Microbieel, dIRAS RA-I&I I&I

Publikováno v: Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Nature Communications 10 (2019) 1
Hendriksen, R S, Munk, P, Njage, P M K, van Bunnik, B, McNally, L, Lukjancenko, O, Röder, T, Nieuwenhuijse, D, Karlsmose Pedersen, S, Kjeldgaard, J S, Kaas, R S, Clausen, P T L C, Vogt, J K, Leekitcharoenphon, P, van de Schans, M G M, Zuidema, T, de Roda Husman, A M, Rasmussen, S, Petersen, B, Global, S S P C, Amid, C, Cochrane, G, Sicheritz-Pontén, T, Schmitt, H, Alvarez, J R M, Aidara-Kane, A, Pamp, S J, Lund, O, Hald, T, Woolhouse, M, Koopmans, M P, Vigre, H, Petersen, T N & Aarestrup, F M 2019, ' Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage ', Nature Communications, vol. 10, 1124 . https://doi.org/10.1038/s41467-019-08853-3
IRTA Pubpro. Open Digital Archive
Institut de Recerca i Tecnologia Agroalimentàries (IRTA)
Hendriksen, R S, Munk, P, Njage, P, van Bunnik, B, McNally, L, Lukjancenko, O, Röder, T, Nieuwenhuijse, D, Pedersen, S K, Kjeldgaard, J, Kaas, R S, Clausen, P T L C, Vogt, J K, Leekitcharoenphon, P, van de Schans, M G M, Zuidema, T, de Roda Husman, A M, Rasmussen, S, Petersen, B, Amid, C, Cochrane, G, Sicheritz-Ponten, T, Schmitt, H, Alvarez, J R M, Aidara-Kane, A, Pamp, S J, Lund, O, Hald, T, Woolhouse, M, Koopmans, M P, Vigre, H & Petersen, T N & Aarestrup, F M 2019, ' Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage ', Nature Communications, vol. 10, 1124 . https://doi.org/10.1038/s41467-019-08853-3
Nature Communications, 10(1)
Nature Communications
Nature Communications, 10:1124. Nature Publishing Group
Nature Communications, 10(1124). Nature Publishing Group

Publisher's version (útgefin grein)
Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining representative data on AMR for healthy human populations is difficult. Here, we use metagenomic analysis of untreated

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a353f476da8481755b986b5bb4af3464
https://doaj.org/article/e1cb1167bef748e5b629d0ee4367b54a

Setting a baseline for global urban virome surveillance in sewage

Autor: Nieuwenhuijse, David, Munnink, Bas B. Oude, Phan, My V. T., Hendriksen, Rene S., Bego, Artan, Rees, Catherine, Neilson, Elizabeth Heather, Coventry, Kris, Collignon, Peter, Allerberger, Franz, Rahube, Teddie O, Oliveira, Guilherme, Ivanov, Ivan, Sopheak, Thet, Vuthy, Yith, Yost, Christopher K., Tabo, Djim-adjim, Cuadros‑Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Jiao, Xiaoyang, Donado‑Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Elsborg, Bodil, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Saba, Courage Kosi Setsoafia, Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R, Hatha, Abdulla Mohamed, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran‑Gilad, Jacob, Battisti, Antonio, Alba, Patricia, Wester, Astrid Louise, Holmstad, Rune, Munk, Patrick, Venkatakrishnan, Shweta, Aarestrup, Frank M., Cotten, Matthew, Koopmans, Marion P. G.

Externí odkaz: https://hdl.handle.net/11250/2775157

CTX-M-55-type ESBL-producingSalmonella entericaare emerging among retail meats in Phnom Penh, Cambodia

Autor: Laurence Watier, Bouya Ndao, Didier Guillemot, Vuthy Yith, Thida Chon, Patrice Piola, Maud Seguy, Balla Sy, Perlinot Herindrainy, Muriel Vray, Alexandra Kerleguer, Marguerite Diatta, Jean Baptiste Diouf, Zafitsara Zo Andrianirina, Siyin Lach, Laetitia Fabre, Malika Gouali, Benoit Garin, Nita Sem, Bich-Tram Huynh, Raymond Bercion, Bodonirina Tanjona Raheliarivao, Abdou Armya Youssouf, Vincent Richard, Frédérique Randrianirina, Navin Sreng, Elisabeth Delarocque-Astagneau, Agathe de Lauzanne, Feno Manitra Jacob Rakotoarimanana, Veronique Ngo, Laurence Borand, Sophie Goyet, Joseph Faye, Michael Padget, Sok Touch, Jean-Marc Collard, Pape Samba Dieye, Arnaud Tarantola, Abibatou Ndiaye, Abdoulaye Seck, Amy Gassama Sow, Maya Nadimpalli, Simon Le Hello

Publikováno v: Journal of Antimicrobial Chemotherapy
Journal of Antimicrobial Chemotherapy, 2019, 74 (2), pp.342-348. ⟨10.1093/jac/dky451⟩
Journal of Antimicrobial Chemotherapy, Oxford University Press (OUP), 2019, 74 (2), pp.342-348. ⟨10.1093/jac/dky451⟩

Members of the BIRDY study group : Bodonirina Tanjona Raheliarivao, Frédérique Randrianirina, Perlinot Herindrainy, Zafitsara Zo Andrianirina, Feno Manitra Jacob Rakotoarimanana, Benoit Garin, Jean-Marc Collard, Agathe de Lauzanne, Laurence Borand,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::638cd7f9b9a557018a08c57a43daa1f8
https://doi.org/10.1093/jac/dky451

Tento výsledek nelze pro nepřihlášené uživatele zobrazit.
K zobrazení výsledku je třeba se přihlásit.