Zobrazeno 1 - 10 of 21 pro vyhledávání: '"Vsevolod, Makeev"'
1
Akademický článek
Enhancing SNV identification in whole-genome sequencing data through the incorporation of known genetic variants into the minimap2 index
Autor: Egor Guguchkin, Artem Kasianov, Maksim Belenikin, Gaukhar Zobkova, Ekaterina Kosova, Vsevolod Makeev, Evgeny Karpulevich
Publikováno v: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-12 (2024)
Abstract Motivation Alignment of reads to a reference genome sequence is one of the key steps in the analysis of human whole-genome sequencing data obtained through Next-generation sequencing (NGS) technologies. The quality of the subsequent steps of
Externí odkaz: https://doaj.org/article/5673c13f49cb427882fab0752bb16df8
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3
Akademický článek
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Autor: Giovanna Ambrosini, Ilya Vorontsov, Dmitry Penzar, Romain Groux, Oriol Fornes, Daria D. Nikolaeva, Benoit Ballester, Jan Grau, Ivo Grosse, Vsevolod Makeev, Ivan Kulakovskiy, Philipp Bucher
Publikováno v: Genome Biology, Vol 21, Iss 1, Pp 1-18 (2020)
Abstract Background Positional weight matrix (PWM) is a de facto standard model to describe transcription factor (TF) DNA binding specificities. PWMs inferred from in vivo or in vitro data are stored in many databases and used in a plethora of biolog
Externí odkaz: https://doaj.org/article/2d492ad437f8494bbf89e6f28ecd6dc1
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4
A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand
Autor: Alina G Mikhailova, Alina A Mikhailova, Kristina Ushakova, Evgeny O Tretiakov, Dmitrii Iliushchenko, Victor Shamansky, Valeria Lobanova, Ivan Kozenkov, Bogdan Efimenko, Andrey A Yurchenko, Elena Kozenkova, Evgeny M Zdobnov, Vsevolod Makeev, Valerian Yurov, Masashi Tanaka, Irina Gostimskaya, Zoe Fleischmann, Sofia Annis, Melissa Franco, Kevin Wasko, Stepan Denisov, Wolfram S Kunz, Dmitry Knorre, Ilya Mazunin, Sergey Nikolaev, Jacques Fellay, Alexandre Reymond, Konstantin Khrapko, Konstantin Gunbin, Konstantin Popadin
Publikováno v: Denisov, S 2022, ' A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand ', Nucleic acids research, vol. 50, pp. 10264–10277 . https://doi.org/10.1093/nar/gkac779
The mutational spectrum of the mitochondrial DNA (mtDNA) does not resemble any of the known mutational signatures of the nuclear genome and variation in mtDNA mutational spectra between different organisms is still incomprehensible. Since mitochondri
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3aaf04f68180d9afc181527a26230b3c
https://doi.org/10.1093/nar/gkac779
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6
An analysis of the secondary structure of spider spidroins I and II belonging to different species
Autor: Ragulina, Le, Vsevolod Makeev, Esipova, Ng, Tumanyan, Vg, Vlasov, Pk, Bogush, Vg, Debabov, Vg
Publikováno v: Biofizika, 49(6), 1147-1149
ResearcherID
Web of Science
We have analyzed the secondary structure of spidroin proteins of I and II types, related to spiders of different species. We used standard methods of secondary structure prediction NNPREDICT and JPRED and also analyzed the occurrences of oligopeptide
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::84290abe41a72e108b6a96516c91c6f2
https://research.rug.nl/en/publications/481d445e-cf5a-4043-8371-6339b04d317c
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7
Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues
Autor: Mathias, Vandenbogaert, Vsevolod, Makeev
Publikováno v: In silico biology. 3(1-2)
Recognition sites for type II restriction and modification enzymes in genomes of several bacteria are recognized as semi-palindromic motifs and are avoided at a significant degree. The key idea of contrast word analysis with respect to RMS recognitio
Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::feb2fbe467f5a2fb9443cb5bf256d058
https://pubmed.ncbi.nlm.nih.gov/12762852
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