The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads

Autor: Wöhner, Thomas W., Emeriewen, Ofere F., Wittenberg, Alexander H.J., Schneiders, Harrie, Vrijenhoek, Ilse, Halász, Júlia, Hrotkó, Károly, Hoff, Katharina J., Gabriel, Lars, Lempe, Janne, Keilwagen, Jens, Berner, Thomas, Schuster, Mirko, Peil, Andreas, Wünsche, Jens, Kropop, Stephan, Flachowsky, Henryk

Publikováno v: In Genomics November 2021 113(6):4173-4183

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.

Autor: Koren S; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Bao Z; Department of Molecular Biology, Max Planck Institute for Biology Tübingen, Tübingen, BadenWürttemberg, Germany.; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China., Guarracino A; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee, USA.; Human Technopole, Milan, Italy., Ou S; Ohio State University, Columbus, OH, USA., Goodwin S; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Jenike KM; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Lucas J; University of California Santa Cruz, Santa Cruz, CA, USA., McNulty B; University of California Santa Cruz, Santa Cruz, CA, USA., Park J; University of California Santa Cruz, Santa Cruz, CA, USA., Rautiainen M; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rhie A; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Roelofs D; KeyGene, Agro Business Park 90, 6708 PW Wageningen, Netherlands., Schneiders H; KeyGene, Agro Business Park 90, 6708 PW Wageningen, Netherlands., Vrijenhoek I; KeyGene, Agro Business Park 90, 6708 PW Wageningen, Netherlands., Nijbroek K; KeyGene, Agro Business Park 90, 6708 PW Wageningen, Netherlands., Ware D; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Schatz MC; Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA., Garrison E; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, Tennessee, USA., Huang S; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.; State Key Laboratory of Tropical Crop Breeding, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China., McCombie WR; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA., Miga KH; University of California Santa Cruz, Santa Cruz, CA, USA., Wittenberg AHJ; KeyGene, Agro Business Park 90, 6708 PW Wageningen, Netherlands., Phillippy AM; Genome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Mar 19. Date of Electronic Publication: 2024 Mar 19.