Large-scale assessment of pros and cons of autopsy-derived or tumor-matched tissues as the norms for gene expression analysis in cancers.

Autor: Sorokin M; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia.; Omicsway Corp., Walnut, CA 91789, USA.; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia., Buzdin AA; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.; World-Class Research Center 'Digital biodesign and personalized healthcare', Sechenov First Moscow State Medical University, Moscow, Russia.; PathoBiology Group, European Organization for Research and Treatment of Cancer (EORTC), Brussels, Belgium., Guryanova A; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia., Efimov V; World-Class Research Center 'Digital biodesign and personalized healthcare', Sechenov First Moscow State Medical University, Moscow, Russia., Suntsova MV; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia.; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia., Zolotovskaia MA; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia.; Omicsway Corp., Walnut, CA 91789, USA., Koroleva EV; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia., Sekacheva MI; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia.; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia., Tkachev VS; Omicsway Corp., Walnut, CA 91789, USA.; Oncobox Ltd., Moscow 121205, Russia., Garazha A; Omicsway Corp., Walnut, CA 91789, USA.; Oncobox Ltd., Moscow 121205, Russia., Kremenchutckaya K; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region 141701, Russia., Drobyshev A; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia., Seryakov A; Medical Holding SM-Clinic, 105120 Moscow, Russia., Gudkov A; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia., Alekseenko IV; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.; Institute of Molecular Genetics of National Research Centre 'Kurchatov Institute', 2, Kurchatov Square, Moscow 123182, Russian.; FSBI 'National Medical Research Center for Obstetrics, Gynecology and Perinatology named after Academician V.I. Kulakov' Ministry of Healthcare of the Russian Federation, Moscow 117198, Russia., Rakitina O; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia., Kostina MB; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia., Vladimirova U; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia.; Oncobox Ltd., Moscow 121205, Russia., Moisseev A; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia., Bulgin D; Research Institute of Medical Primatology, 177 Mira str., Veseloye, Sochi 354376, Russia., Radomskaya E; Research Institute of Medical Primatology, 177 Mira str., Veseloye, Sochi 354376, Russia., Shestakov V; Research Institute of Medical Primatology, 177 Mira str., Veseloye, Sochi 354376, Russia., Baklaushev VP; Federal Research and Clinical Center, FMBA of Russia, Russia., Prassolov V; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilova str., Moscow 119991, Russia., Shegay PV; National Medical Research Radiological Center of the Ministry of Health of the Russian Federation, 249036 Obninsk, Russia., Li X; UCLA Technology Center for Genomics & Bioinformatics, Department of Pathology & Laboratory Medicine, 650 Charles E Young Dr., Los Angeles, CA 90095, USA., Poddubskaya EV; I.M. Sechenov First Moscow State Medical University, Moscow 119991, Russia., Gaifullin N; Department of Physiology and General Pathology, Faculty of Medicine, Lomonosov Moscow State University, Moscow 119991, Russia.

Publikováno v: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2023 Aug 03; Vol. 21, pp. 3964-3986. Date of Electronic Publication: 2023 Aug 03 (Print Publication: 2023).

Growth factor signaling predicts therapy resistance mechanisms and defines neuroblastoma subtypes.

Autor: Lebedev T; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia. lebedevtd@gmail.com.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia. lebedevtd@gmail.com., Vagapova E; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia., Spirin P; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia., Rubtsov P; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia., Astashkova O; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.; Moscow Institute of Physics and Technology (National Research University), Moscow Region, Russia., Mikheeva A; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.; Moscow Institute of Physics and Technology (National Research University), Moscow Region, Russia., Sorokin M; Group for Genomic Regulation of Cell Signaling Systems, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.; Department of Bioinformatics and Molecular Networks, OmicsWay Corporation, Walnut, CA, USA.; Institute of Personalized Medicine, Sechenov First Moscow State Medical University, Moscow, Russia., Vladimirova U; Institute of Personalized Medicine, Sechenov First Moscow State Medical University, Moscow, Russia., Suntsova M; Institute of Personalized Medicine, Sechenov First Moscow State Medical University, Moscow, Russia., Konovalov D; D. Rogachyov Federal Research Center of Pediatric Hematology, Oncology and Immunology, Moscow, Russia., Roumiantsev A; D. Rogachyov Federal Research Center of Pediatric Hematology, Oncology and Immunology, Moscow, Russia., Stocking C; Research Department Cell and Gene Therapy, Department of Stem Cell Transplantation, University Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany.; Heinrich-Pette-Institute, Leibniz Institute for Experimental Virology, Hamburg, Germany., Buzdin A; Moscow Institute of Physics and Technology (National Research University), Moscow Region, Russia.; Group for Genomic Regulation of Cell Signaling Systems, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia.; Department of Bioinformatics and Molecular Networks, OmicsWay Corporation, Walnut, CA, USA.; Institute of Personalized Medicine, Sechenov First Moscow State Medical University, Moscow, Russia., Prassolov V; Department of Cancer Cell Biology, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.

Publikováno v: Oncogene [Oncogene] 2021 Nov; Vol. 40 (44), pp. 6258-6272. Date of Electronic Publication: 2021 Sep 23.

DNA repair pathway activation features in follicular and papillary thyroid tumors, interrogated using 95 experimental RNA sequencing profiles.

Autor: Vladimirova U; I.M. Sechenov First Moscow State Medical University, Moscow, 119991, Russia.; Pirogov Russian National Research Medical University, Moscow, 117997, Russia., Rumiantsev P; Endocrinology Research Centre, Moscow, 117312, Russia.; Pirogov Russian National Research Medical University, Moscow, 117997, Russia., Zolotovskaia M; Pirogov Russian National Research Medical University, Moscow, 117997, Russia., Albert E; Omicsway Corp., Walnut, CA, 91789, USA., Abrosimov A; Endocrinology Research Centre, Moscow, 117312, Russia., Slashchuk K; Endocrinology Research Centre, Moscow, 117312, Russia., Nikiforovich P; Endocrinology Research Centre, Moscow, 117312, Russia., Chukhacheva O; Endocrinology Research Centre, Moscow, 117312, Russia., Gaifullin N; Faculty of Fundamental Medicine, Lomonosov Moscow State University, Moscow, 119992, Russia., Suntsova M; I.M. Sechenov First Moscow State Medical University, Moscow, 119991, Russia., Zakharova G; Endocrinology Research Centre, Moscow, 117312, Russia., Glusker A; I.M. Sechenov First Moscow State Medical University, Moscow, 119991, Russia., Nikitin D; Omicsway Corp., Walnut, CA, 91789, USA.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia., Garazha A; Omicsway Corp., Walnut, CA, 91789, USA., Li X; Department of Pathology and Laboratory Medicine, University of California, Los Angeles, CA, 90095, USA., Kamashev D; I.M. Sechenov First Moscow State Medical University, Moscow, 119991, Russia., Drobyshev A; I.M. Sechenov First Moscow State Medical University, Moscow, 119991, Russia., Kochergina-Nikitskaya I; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia., Sorokin M; I.M. Sechenov First Moscow State Medical University, Moscow, 119991, Russia.; Omicsway Corp., Walnut, CA, 91789, USA.; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, 141701, Russia., Buzdin A; I.M. Sechenov First Moscow State Medical University, Moscow, 119991, Russia.; Omicsway Corp., Walnut, CA, 91789, USA.; Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, 141701, Russia.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia.

Publikováno v: Heliyon [Heliyon] 2021 Mar 13; Vol. 7 (3), pp. e06408. Date of Electronic Publication: 2021 Mar 13 (Print Publication: 2021).

RNA Sequencing in Comparison to Immunohistochemistry for Measuring Cancer Biomarkers in Breast Cancer and Lung Cancer Specimens.

Autor: Sorokin M; Institute of Personalized Medicine, I.M. Sechenov First Moscow State Medical University, Moscow 119048, Russia.; Omicsway Corp., Walnut, CA 91789, USA.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia., Ignatev K; Karelia Republic Oncological Hospital, Petrozavodsk 185000, Russia., Poddubskaya E; Institute of Personalized Medicine, I.M. Sechenov First Moscow State Medical University, Moscow 119048, Russia.; Vitamed Oncological Clinical Center, Moscow 121309, Russia., Vladimirova U; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia., Gaifullin N; Faculty of Fundamental Medicine, Lomonosov Moscow State University, Moscow 119991, Russia., Lantsov D; Kaluga Regional Oncological Hospital, Kaluga 248007, Russia., Garazha A; Omicsway Corp., Walnut, CA 91789, USA., Allina D; Institute of Personalized Medicine, I.M. Sechenov First Moscow State Medical University, Moscow 119048, Russia., Suntsova M; Institute of Personalized Medicine, I.M. Sechenov First Moscow State Medical University, Moscow 119048, Russia., Barbara V; Oncological Dispensary of the Republic of Karelia, Petrozavodsk 185002, Russia., Buzdin A; Institute of Personalized Medicine, I.M. Sechenov First Moscow State Medical University, Moscow 119048, Russia.; Omicsway Corp., Walnut, CA 91789, USA.; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia.; Moscow Institute of Physics and Technology, Moscow Region 141701, Russia.

Publikováno v: Biomedicines [Biomedicines] 2020 May 09; Vol. 8 (5). Date of Electronic Publication: 2020 May 09.

Targeted Inhibitors of EGFR: Structure, Biology, Biomarkers, and Clinical Applications.

Autor: Shaban, Nina^1,2 (AUTHOR) dkamashev@gmail.com, Kamashev, Dmitri^1,2,3 (AUTHOR) buzdin@oncobox.com, Emelianova, Aleksandra⁴ (AUTHOR) emelianova-a.g@yandex.ru, Buzdin, Anton^1,2,3,5 (AUTHOR)

Publikováno v: Cells (2073-4409). Jan2024, Vol. 13 Issue 1, p47. 34p.