Zobrazeno 1 - 10
of 58
pro vyhledávání: '"Vladimir V. Kapitonov"'
Autor:
Malte Petersen, Sven Winter, Raphael Coimbra, Menno J. de Jong, Vladimir V. Kapitonov, Maria A. Nilsson
Publikováno v:
Mobile DNA, Vol 12, Iss 1, Pp 1-13 (2021)
Abstract Background The majority of structural variation in genomes is caused by insertions of transposable elements (TEs). In mammalian genomes, the main TE fraction is made up of autonomous and non-autonomous non-LTR retrotransposons commonly known
Externí odkaz:
https://doaj.org/article/618ed63eabf24c86a45f05f07ffd3135
Autor:
Ivana Grabundzija, Zoltán Ivics, Andreas Gogol-Döring, Ellen J. Pritham, Simon A. Messing, Tanja Diem, Rachel Cosby, Ilija Bilic, Zsuzsanna Izsvák, Fred Dyda, Jainy Thomas, Anna Dalda, Jerzy Jurka, Csaba Miskey, Vladimir V. Kapitonov
Publikováno v:
Nature Communications, Vol 7, Iss 1, Pp 1-12 (2016)
Nature Communications
Nature Communications
Helitron transposons capture and mobilize gene fragments in eukaryotes, but experimental evidence for their transposition is lacking in the absence of an isolated active element. Here we reconstruct Helraiser, an ancient element from the bat genome,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::11f4c694d5073fc698c7212782d175d1
https://doaj.org/article/8ad4073178cd4d31a1a49f1829a017bc
https://doaj.org/article/8ad4073178cd4d31a1a49f1829a017bc
Publikováno v:
Journal of Bacteriology
Bacterial genomes encode numerous homologs of Cas9, the effector protein of the type II CRISPR-Cas systems. The homology region includes the arginine-rich helix and the HNH nuclease domain that is inserted into the RuvC-like nuclease domain. These ge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ce35a1903094aeff9e3ea894b7cbb8d
http://europepmc.org/articles/PMC4810608
http://europepmc.org/articles/PMC4810608
Publikováno v:
Molecular Biology and Evolution. 28:17-20
Autonomous non-long terminal repeat (non-LTR) retrotransposons and their repetitive remnants are ubiquitous components of mammalian genomes. Recently, we identified non-LTR retrotransposon families, Ingi-1_AAl and Ingi-1_EE, in two hedgehog genomes.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::349cf2fbc5d4da8a17e98d3c94d54c14
https://doi.org/10.1093/molbev/msq220
https://doi.org/10.1093/molbev/msq220
Publikováno v:
Annual Review of Genomics and Human Genetics. 8:241-259
Eukaryotic genomes contain vast amounts of repetitive DNA derived from transposable elements (TEs). Large-scale sequencing of these genomes has produced an unprecedented wealth of information about the origin, diversity, and genomic impact of what wa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85bd180507482213d86e78074b7d0249
https://doi.org/10.1146/annurev.genom.8.080706.092416
https://doi.org/10.1146/annurev.genom.8.080706.092416
Autor:
Toshitaka Kumagai, Kay Vienken, Li-Jun Ma, Toshihiro Tanaka, Christina C. Spevak, Paul S. Dyer, Mark L. Farman, Jerzy Jurka, David B. Archer, Claudio Scazzocchio, Christiane Bouchier, Miguel A. Peñalva, Gerhard H. Braus, John H. Doonan, Arnab Pain, Kiyoshi Asai, Eric U. Selker, Reinhard Fischer, James E. Galagan, Seth Purcell, William C. Nierman, Oliver W. Draht, Michelle Momany, Jennifer R. Wortman, Deborah Bell-Pedersen, Bruce W. Birren, Berl R. Oakley, Christina A. Cuomo, David W. Denning, Michael J. Hynes, Jonathan Butler, Su-In Lee, John Clutterbuck, Jae-Hyuk Yu, Christophe d'Enfert, Vladimir V. Kapitonov, Steve Harris, Gustavo H. Goldman, Masayuki Machida, Serafim Batzoglou, Sarah E. Calvo, Mathieu Paoletti, Bruce L. Miller, Matthew S. Sachs, Mark X. Caddick, Silke Busch, Meray Baştürkmen, Michael Freitag, Sam Griffiths-Jones, Stephen A. Osmani
Publikováno v:
Nature
Nature, Nature Publishing Group, 2005, 438 (7071), pp.1105-1115. ⟨10.1038/nature04341⟩
Nature, 2005, 438 (7071), pp.1105-1115. ⟨10.1038/nature04341⟩
Nature, Nature Publishing Group, 2005, 438 (7071), pp.1105-1115. ⟨10.1038/nature04341⟩
Nature, 2005, 438 (7071), pp.1105-1115. ⟨10.1038/nature04341⟩
International audience; The aspergilli comprise a diverse group of filamentous fungi spanning over 200 million years of evolution. Here we report the genome sequence of the model organism Aspergillus nidulans, and a comparative study with Aspergillus
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c9c31c34471cf5b57d5e81cf480f8b7
https://doi.org/10.1038/nature04341
https://doi.org/10.1038/nature04341
Publikováno v:
Cytogenetic and Genome Research. 110:117-123
We analyzed potential mechanisms determining chromosomal distributions of the mouse B1 and B2 non-LTR retrotransposons, also known as SINE elements. We report that young B1 and B2 SINEs are underrepresented on chromosome X relative to autosomes, whic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b5128465c1fd65be9aabbc3e2916ccfb
https://doi.org/10.1159/000084943
https://doi.org/10.1159/000084943
Autor:
William G. Miller, Bruce M. Pearson, Craig T. Parker, Robert E. Mandrell, Jerry M. Wells, Vladimir V. Kapitonov
Publikováno v:
Microbiology, 151(2), 337-351
Microbiology 151 (2005) 2
Microbiology 151 (2005) 2
The type I restriction–modification (hsd) systems of 73 Campylobacter jejuni strains were characterized according to their DNA and amino acid sequences, and/or gene organization. A number of new genes were identified which are not present in the se
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3291b268c37572f6773537ed27b3e022
https://doi.org/10.1099/mic.0.27327-0
https://doi.org/10.1099/mic.0.27327-0
Autor:
Jerzy Jurka, Vladimir V. Kapitonov
Publikováno v:
DNA and Cell Biology. 23:311-324
In this study we report main properties of Harbinger DNA transposons identified in protists, plants, insects, worms, and vertebrates. This is the first superfamily of eukaryotic DNA transposons where all autonomous transposons, even those that are ho
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a0a19ffe2ac887f7b703f5989b7ec181
https://doi.org/10.1089/104454904323090949
https://doi.org/10.1089/104454904323090949
Publikováno v:
Proceedings of the National Academy of Sciences. 101:1268-1272
Alu and L1 are families of non-LTR retrotransposons representing approximately equal 30% of the human genome. Genomic distributions of young Alu and L1 elements are quite similar, but over time, Alu densities in GC-rich DNA increase in comparison wit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::afb304ebc8bec88bc80e3609b4b65050
https://doi.org/10.1073/pnas.0308084100
https://doi.org/10.1073/pnas.0308084100