Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Vladimir Sarpe"'
Autor:
Frantisek Filandr, Vladimir Sarpe, Shaunak Raval, D. Alex Crowder, Morgan F. Khan, Pauline Douglas, Stephen Coales, Rosa Viner, Aleem Syed, John A. Tainer, Susan P. Lees-Miller, David C. Schriemer
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)
Abstract We present a hydrogen/deuterium exchange workflow coupled to tandem mass spectrometry (HX-MS2) that supports the acquisition of peptide fragment ions alongside their peptide precursors. The approach enables true auto-curation of HX data by m
Externí odkaz:
https://doaj.org/article/8c900839ad1c4b10a419586ee7d79785
Autor:
Frantisek Filandr, Vladimir Sarpe, Shaunak Raval, D. Alex Crowder, Morgan F. Khan, Pauline Douglas, Stephen Coales, Rosa Viner, Aleem Syed, John A. Tainer, Susan P. Lees-Miller, David C. Schriemer
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-1 (2024)
Externí odkaz:
https://doaj.org/article/165f5b3a8f494e12ab6cbfdea6535412
Autor:
Nicholas K H Ostan, Rong-Hua Yu, Dixon Ng, Christine Chieh-Lin Lai, Anastassia K Pogoutse, Vladimir Sarpe, Morgan Hepburn, Joey Sheff, Shaunak Raval, David C Schriemer, Trevor F Moraes, Anthony B Schryvers
Publikováno v:
PLoS Pathogens, Vol 13, Iss 3, p e1006244 (2017)
Lactoferrin binding protein B (LbpB) is a bi-lobed outer membrane-bound lipoprotein that comprises part of the lactoferrin (Lf) receptor complex in Neisseria meningitidis and other Gram-negative pathogens. Recent studies have demonstrated that LbpB p
Externí odkaz:
https://doaj.org/article/15bb7500d07e4c20a8ee1c1467188767
Autor:
Joseph Anacleto, Cristina Lento, Vladimir Sarpe, Ayesha Maqsood, Banafsheh Mehrazma, David Schriemer, Derek J. Wilson
Publikováno v:
Analytical Chemistry. 95:4421-4428
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e0dc2f7799ea3fd279e36a8e1a2a24d2
https://doi.org/10.1021/acs.analchem.2c05003
https://doi.org/10.1021/acs.analchem.2c05003
Autor:
D. Alex Crowder, Vladimir Sarpe, Bruno C. Amaral, Nicholas I. Brodie, Andrew R. M. Michael, David Schriemer
Crosslinking mass spectrometry (XL-MS) is a valuable technique for the generation of point-to-point distance measurements in protein space. Applications involvingin situchemical crosslinking have created the possibility of mapping whole protein inter
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0d15943aee838afd645b17fe4b5b8235
https://doi.org/10.1101/2023.01.20.524983
https://doi.org/10.1101/2023.01.20.524983
Autor:
Rosa Viner, Vladimir Sarpe, David C. Schriemer, Morgan Hepburn, Terry Zhang, Shaunak Raval, D. Alex Crowder
Publikováno v:
Analytical Chemistry. 93:4246-4254
The data analysis practices associated with hydrogen-deuterium exchange mass spectrometry (HX-MS) lag far behind that of most other MS-based protein analysis tools. A reliance on external tools from other fields and a persistent need for manual data
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f6a8fabc811f5f1d5eca8a8b89e6f72d
https://doi.org/10.1021/acs.analchem.0c05045
https://doi.org/10.1021/acs.analchem.0c05045
Publikováno v:
Analytical Chemistry. 91:8492-8499
Covalent labeling with mass spectrometry (CL-MS) provides a direct measure of the chemical and structural features of proteins with the potential for resolution at the amino-acid level. Unfortunately, most applications of CL-MS are limited to narrowl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::86cd3a46935a49cbb59897a4584e603f
https://doi.org/10.1021/acs.analchem.9b01625
https://doi.org/10.1021/acs.analchem.9b01625
Autor:
Christoph U. Schräder, Brett Larsen, Martial Rey, Seema Sharma, Petr Man, Vlad Zabrouskov, David C. Schriemer, Vladimir Sarpe, Linda Lee
Publikováno v:
Molecular and Cellular Proteomics
Molecular and Cellular Proteomics, American Society for Biochemistry and Molecular Biology, 2017, 16 (6), pp.1162-1171. ⟨10.1074/mcp.M116.066803⟩
Molecular and Cellular Proteomics, American Society for Biochemistry and Molecular Biology, 2017, 16 (6), pp.1162-1171. ⟨10.1074/mcp.M116.066803⟩
International audience; Trypsin dominates bottom-up proteomics, but there are reasons to consider alternative enzymes. Improving sequence coverage, exposing proteomic "dark matter," and clustering post-translational modifications in different ways an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9d7e4cb6d59bdf6a176f49dcfed13a0b
https://doi.org/10.1074/mcp.m116.066803
https://doi.org/10.1074/mcp.m116.066803
Autor:
Vladimir Sarpe, David C. Schriemer
Publikováno v:
Current Opinion in Biotechnology. 43:110-117
Large and disparate sets of LC-MS data are generated by modern metabolomics profiling initiatives, and while useful software tools are available to annotate and quantify compounds, the field requires continued software development in order to sustain
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53b7894cf47d4fe678d7a87adc8c2d40
https://doi.org/10.1016/j.copbio.2016.11.001
https://doi.org/10.1016/j.copbio.2016.11.001
Autor:
Morgan Hepburn, Atefeh Rafiei, David C. Schriemer, Vladimir Sarpe, Troy J. Pells, Shaunak Raval, Daniel S. Ziemianowicz, D. Alex Crowder
Publikováno v:
Journal of Proteomics. 225:103844
Structural Mass Spectrometry (SMS) provides a comprehensive toolbox for the analysis of protein structure and function. It offers multiple sources of structural information that are increasingly useful for integrative structural modeling of complex p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::00d14d155f8c5dced3bc6f530bddeaae
https://doi.org/10.1016/j.jprot.2020.103844
https://doi.org/10.1016/j.jprot.2020.103844