Zobrazeno 1 - 5
of 5
pro vyhledávání: '"Vivian Yudistyra"'
Autor:
Garyk Brixi, Tianzheng Ye, Lauren Hong, Tian Wang, Connor Monticello, Natalia Lopez-Barbosa, Sophia Vincoff, Vivian Yudistyra, Lin Zhao, Elena Haarer, Tianlai Chen, Sarah Pertsemlidis, Kalyan Palepu, Suhaas Bhat, Jayani Christopher, Xinning Li, Tong Liu, Sue Zhang, Lillian Petersen, Matthew P. DeLisa, Pranam Chatterjee
Publikováno v:
Communications Biology, Vol 6, Iss 1, Pp 1-10 (2023)
Abstract Protein-protein interactions (PPIs) are critical for biological processes and predicting the sites of these interactions is useful for both computational and experimental applications. We present a Structure-agnostic Language Transformer and
Externí odkaz:
https://doaj.org/article/c386e40794b146948717287a87e8d486
Autor:
Lin Zhao, Sabrina R. T. Koseki, Rachel A. Silverstein, Nadia Amrani, Christina Peng, Christian Kramme, Natasha Savic, Martin Pacesa, Tomás C. Rodríguez, Teodora Stan, Emma Tysinger, Lauren Hong, Vivian Yudistyra, Manvitha R. Ponnapati, Joseph M. Jacobson, George M. Church, Noah Jakimo, Ray Truant, Martin Jinek, Benjamin P. Kleinstiver, Erik J. Sontheimer, Pranam Chatterjee
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-8 (2023)
Abstract CRISPR enzymes require a defined protospacer adjacent motif (PAM) flanking a guide RNA-programmed target site, limiting their sequence accessibility for robust genome editing applications. In this study, we recombine the PAM-interacting doma
Externí odkaz:
https://doaj.org/article/c6eaa1afc2b34657a91e037a58ba1052
Autor:
Aparna Raghavachar Chakravarti, Chad E. Groer, Huan Gong, Vivian Yudistyra, Marcus Laird Forrest, Cory J. Berkland
Publikováno v:
Molecular Pharmaceutics. 20:1975-1989
Autor:
Garyk Brixi, Tianzheng Ye, Kalyan Palepu, Lauren Hong, Vivian Yudistyra, Sophia Vincoff, Jayani Christopher, Xinning Li, Suhaas Bhat, Connor Monticello, Natalia Lopez-Barbosa, Lillian Petersen, Tian-Lai Zang, Tong Liu, Lin Zhao, Sue Zhang, Manvitha Ponnapati, Emma Tysinger, Teodora Stan, Sabrina Koseki, Matthew DeLisa, Pranam Chatterjee
Here, we integrate fine-tuned protein language models and protein-protein interaction databases to develop a Structure-agnostic Language Transformer & Peptide Prioritization module that efficiently selects peptides from interaction interfaces, withou
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fe54c68539f2d58a2da2d3a773bed263
https://doi.org/10.21203/rs.3.rs-1694183/v1
https://doi.org/10.21203/rs.3.rs-1694183/v1
Autor:
Sabrina Koseki, Lauren Hong, Vivian Yudistyra, Teodora Stan, Emma Tysinger, Rachel Silverstein, Christian Kramme, Nadia Amrani, Natasha Savic, Martin Pacesa, Tomás Rodriguez, Manvitha Ponnapati, Joseph Jacobson, George Church, Ray Truant, Martin Jinek, Benjamin Kleinstiver, Erik Sontheimer, Pranam Chatterjee
CRISPR enzymes require a defined protospacer adjacent motif (PAM) flanking a guide RNA-programmed target site, limiting their sequence accessibility for robust genome editing applications. In this study, we recombine the PAM-interacting domain of SpR
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ccc773ed8423a1eacd9b56425b4f34ee
https://doi.org/10.21203/rs.3.rs-2625838/v1
https://doi.org/10.21203/rs.3.rs-2625838/v1