Zobrazeno 1 - 10
of 57
pro vyhledávání: '"Vivian Bellofatto"'
Autor:
Junilda Spirollari, Jason T.L. Wang, Kaizhong Zhang, Vivian Bellofatto, Yongkyu Park, Bruce A. Shapiro
Publikováno v:
Bioinformatics and Biology Insights, Vol 3, Pp 51-69 (2009)
Thermodynamic processes with free energy parameters are often used in algorithms that solve the free energy minimization problem to predict secondary structures of single RNA sequences. While results from these algorithms are promising, an observatio
Externí odkaz:
https://doaj.org/article/1622b7bc2afd46eeb9f8e4d493c05491
Autor:
Anish Das, Vivian Bellofatto
Publikováno v:
PLoS ONE, Vol 4, Iss 9, p e6959 (2009)
The carboxy-terminal domain (CTD) of the largest subunit (RPB1) of RNA polymerase II (RNAP-II) is essential for gene expression in metazoa and yeast. The canonical CTD is characterized by heptapeptide repeats. Differential phosphorylation of canonica
Externí odkaz:
https://doaj.org/article/94b56d588c05426b86ca6ab296e8a514
Autor:
Jennifer DeCotiis-Mauro, Sun M. Han, Helena Mello, Corey Goyeneche, Giuseppina Marchesini-Tovar, Lianhua Jin, Vivian Bellofatto, David M. Lukac
The cellular Notch signal transduction pathway is intimately associated with infections by Kaposi’s sarcoma-associated herpesvirus (KSHV) and other gamma-herpesviruses. RBP-Jk, the cellular DNA binding component of the canonical Notch pathway, is t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::07520c34f699cb6d89e4eee1d37e7284
https://doi.org/10.1101/2022.10.21.513206
https://doi.org/10.1101/2022.10.21.513206
Publikováno v:
Parasitology Research. 117:1095-1104
Trypanosoma cruzi, the protozoan parasite that causes Chagas disease in humans, has a complex life cycle that promotes survival in disparate environments. In each environment, the parasite must fine-tune its metabolic pathways to divide and multiply.
Autor:
David A. Wah, Jennifer B. Palenchar, Patricia Soteropoulos, Rachel Morales, Anish Das, Vivian Bellofatto, Virginie Aris, David M. Lukac, Mahrukh Banday, Wenzhe Liu
Publikováno v:
Molecular and Biochemical Parasitology. 186:139-142
RNA polymerase II (RNAP-II) synthesizes the m(7)G-capped Spliced Leader (SL) RNA and most protein-coding mRNAs in trypanosomes. RNAP-II recruitment to DNA usually requires a set of transcription factors that make sequence-specific contacts near trans
Autor:
Jeffrey A. Rosenfeld, Anish Das, Mahrukh Banday, Yun-Juan Chang, Michael A. Fisher, Vivian Bellofatto
Publikováno v:
Nucleic Acids Research
A unique feature of RNA polymerase II (RNA pol II) is its long C-terminal extension, called the carboxy-terminal domain (CTD). The well-studied eukaryotes possess a tandemly repeated 7-amino-acid sequence, called the canonical CTD, which orchestrates
Autor:
Anish Das, George A. M. Cross, Mahrukh Banday, Vivian Bellofatto, Antonio M. Estévez, Stacey A. Garcia, Rachel Morales, Li Hao
Publikováno v:
Digital.CSIC. Repositorio Institucional del CSIC
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RNA-binding proteins that target mRNA coding regions are emerging as regulators of post-transcriptional processes in eukaryotes. Here we describe a newly identified RNA-binding protein, RBP42, which targets the coding region of mRNAs in the insect fo
Publikováno v:
Eukaryotic Cell. 10:1230-1240
Deadenylation is often the rate-limiting event in regulating the turnover of cellular mRNAs in eukaryotes. Removal of the poly(A) tail initiates mRNA degradation by one of several decay pathways, including deadenylation-dependent decapping, followed
Autor:
Elzbieta Bojarska, Edward Darzynkiewicz, Vivian Bellofatto, Stephanie Ng, Hiren Banerjee, Jacek Jemielity, Janusz Stepinski, Andrzej Guranowski, Maciej Lukaszewicz, Jennifer B. Palenchar, David A. Wah
Publikováno v:
RNA. 15:1554-1564
A new member of the FHIT protein family, designated HIT-45, has been identified in the African trypanosome Trypanosoma brucei. Recombinant HIT-45 proteins were purified from trypanosomal and bacterial protein expression systems and analyzed for subst
Publikováno v:
Computational Biology and Chemistry. 32:264-272
Constrained sequence alignment has been studied extensively in the past. Different forms of constraints have been investigated, where a constraint can be a subsequence, a regular expression, or a probability matrix of symbols and positions. However,