Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen

Autor: David E. Torres, H. Martin Kramer, Vittorio Tracanna, Gabriel L. Fiorin, David E. Cook, Michael F. Seidl, Bart P. H. J. Thomma

Publikováno v: Nature Communications, Vol 15, Iss 1, Pp 1-14 (2024)

Abstract The spatial organization of eukaryotic genomes is linked to their biological functions, although it is not clear how this impacts the overall evolution of a genome. Here, we uncover the three-dimensional (3D) genome organization of the phyto

Externí odkaz: https://doaj.org/article/90404cdc6ba740a5b0b66f0de1a0acc8

Dissecting Disease-Suppressive Rhizosphere Microbiomes by Functional Amplicon Sequencing and 10× Metagenomics

Autor: Vittorio Tracanna, Adam Ossowicki, Marloes L. C. Petrus, Sam Overduin, Barbara R. Terlouw, George Lund, Serina L. Robinson, Sven Warris, Elio G. W. M. Schijlen, Gilles P. van Wezel, Jos M. Raaijmakers, Paolina Garbeva, Marnix H. Medema

Publikováno v: mSystems, Vol 6, Iss 3 (2021)

Soil-borne plant-pathogenic fungi continue to be a major threat to agriculture and horticulture. The genus Fusarium

Externí odkaz: https://doaj.org/article/85927db4b4c34a6cb174f88ff4630783

Dissecting disease-suppressive rhizosphere microbiomes using metagenomics

Autor: Vittorio Tracanna

Plants and microbes have coexisted for hundreds of millions of years and have developed deeply intertwined mutually beneficial relations. Among the many benefits of a selected microbial community, pathogen suppression is a particularly desirable trai

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::efb4b286552207ba9e6169ebc360bbba
https://doi.org/10.18174/561495

Microbial and volatile profiling of soils suppressive to

Autor: Adam, Ossowicki, Vittorio, Tracanna, Marloes L C, Petrus, Gilles, van Wezel, Jos M, Raaijmakers, Marnix H, Medema, Paolina, Garbeva

Publikováno v: Proc Biol Sci

In disease-suppressive soils, microbiota protect plants from root infections. Bacterial members of this microbiota have been shown to produce specific molecules that mediate this phenotype. To date, however, studies have focused on individual suppres

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::0b60d29187c0407d26178a269a65c9e6
https://pubmed.ncbi.nlm.nih.gov/32070256

MIBiG 2.0: a repository for biosynthetic gene clusters of known function

Autor: Samuel C. Epstein, Ashley C. Sisto, Tilmann Weber, Victòria Pascal Andreu, Jorge C. Navarro-Muñoz, George Lund, Justin J. J. van der Hooft, Louise K. Charkoudian, Kai Blin, Jérôme Collemare, Mohammad Alanjary, Nelly Selem-Mojica, Marnix H. Medema, Vittorio Tracanna, Barbara R. Terlouw, Satria A. Kautsar, Simon Shaw, Hernando G. Suarez Duran, Serina L. Robinson, Jeffrey A. van Santen, Roger G. Linington

Publikováno v: Nucleic Acids Research. Oxford University Press
Kautsar, S A, Blin, K, Shaw, S, Navarro-Muñoz, J C, Terlouw, B R, van der Hooft, J J J, van Santen, J A, Tracanna, V, Suarez Duran, H G, Pascal Andreu, V, Selem-Mojica, N, Alanjary, M, Robinson, S L, Lund, G, Epstein, S C, Sisto, A C, Charkoudian, L K, Collemare, J, Linington, R G, Weber, T & Medema, M H 2020, ' MIBiG 2.0: a repository for biosynthetic gene clusters of known function ', Nucleic Acids Research, vol. 48, pp. D454–D458 . https://doi.org/10.1093/nar/gkz882
Nucleic acids research, 48(D1), D454-D458
Nucleic acids research 48 (2020) D1
Nucleic Acids Research

Fueled by the explosion of (meta)genomic data, genome mining of specialized metabolites has become a major technology for drug discovery and studying microbiome ecology. In these efforts, computational tools like antiSMASH have played a central role

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::093a1f279049461569ca81e68d9b9e6b
https://doi.org/10.1093/nar/gkz882