Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Vitor Onuchic"'
Autor:
Bohu Pan, Luyao Ren, Vitor Onuchic, Meijian Guan, Rebecca Kusko, Steve Bruinsma, Len Trigg, Andreas Scherer, Baitang Ning, Chaoyang Zhang, Christine Glidewell-Kenney, Chunlin Xiao, Eric Donaldson, Fritz J. Sedlazeck, Gary Schroth, Gokhan Yavas, Haiying Grunenwald, Haodong Chen, Heather Meinholz, Joe Meehan, Jing Wang, Jingcheng Yang, Jonathan Foox, Jun Shang, Kelci Miclaus, Lianhua Dong, Leming Shi, Marghoob Mohiyuddin, Mehdi Pirooznia, Ping Gong, Rooz Golshani, Russ Wolfinger, Samir Lababidi, Sayed Mohammad Ebrahim Sahraeian, Steve Sherry, Tao Han, Tao Chen, Tieliu Shi, Wanwan Hou, Weigong Ge, Wen Zou, Wenjing Guo, Wenjun Bao, Wenzhong Xiao, Xiaohui Fan, Yoichi Gondo, Ying Yu, Yongmei Zhao, Zhenqiang Su, Zhichao Liu, Weida Tong, Wenming Xiao, Justin M. Zook, Yuanting Zheng, Huixiao Hong
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-26 (2022)
Abstract Background Reproducible detection of inherited variants with whole genome sequencing (WGS) is vital for the implementation of precision medicine and is a complicated process in which each step affects variant call quality. Systematically ass
Externí odkaz:
https://doaj.org/article/a888ae17e58a4cf188efc452ccec0462
Autor:
André Yoshiaki Kashiwabara, Igor Bonadio, Vitor Onuchic, Felipe Amado, Rafael Mathias, Alan Mitchell Durham
Publikováno v:
PLoS Computational Biology, Vol 9, Iss 10, p e1003234 (2013)
Discrete Markovian models can be used to characterize patterns in sequences of values and have many applications in biological sequence analysis, including gene prediction, CpG island detection, alignment, and protein profiling. We present ToPS, a co
Externí odkaz:
https://doaj.org/article/75df58ddcf8443c9bb4650d567fd3822
Autor:
Bohu Pan, Luyao Ren, Vitor Onuchic, Meijian Guan, Rebecca Kusko, Steve Bruinsma, Len Trigg, Andreas Scherer, Baitang Ning, Chaoyang Zhang, Christine Glidewell-Kenney, Chunlin Xiao, Eric Donaldson, Fritz J. Sedlazeck, Gary Schroth, Gokhan Yavas, Haiying Grunenwald, Haodong Chen, Heather Meinholz, Joe Meehan, Jing Wang, Jingcheng Yang, Jonathan Foox, Jun Shang, Kelci Miclaus, Lianhua Dong, Leming Shi, Marghoob Mohiyuddin, Mehdi Pirooznia, Ping Gong, Rooz Golshani, Russ Wolfinger, Samir Lababidi, Sayed Mohammad Ebrahim Sahraeian, Steve Sherry, Tao Han, Tao Chen, Tieliu Shi, Wanwan Hou, Weigong Ge, Wen Zou, Wenjing Guo, Wenjun Bao, Wenzhong Xiao, Xiaohui Fan, Yoichi Gondo, Ying Yu, Yongmei Zhao, Zhenqiang Su, Zhichao Liu, Weida Tong, Wenming Xiao, Justin M. Zook, Yuanting Zheng, Huixiao Hong
Publikováno v:
Genome Biology
Genome Biology, Vol 23, Iss 1, Pp 1-26 (2022)
Genome Biology, Vol 23, Iss 1, Pp 1-26 (2022)
BackgroundReproducible detection of inherited variants with whole genome sequencing (WGS) is vital for the implementation of precision medicine and is a complicated process in which each step affects variant call quality. Systematically assessing rep
Autor:
Matthew E. Roth, Vitor Onuchic, Wendy M. White, Adrian V. Lee, Ryan J. Hartmaier, Ronak Y. Patel, David N. Boone, Aleksandar Milosavljevic, Vesna D. Garovic, Michael L. Samuels, Steffi Oesterreich
Publikováno v:
Cell Reports. 17(8):2075-2086
SummaryCancer progression depends on both cell-intrinsic processes and interactions between different cell types. However, large-scale assessment of cell type composition and molecular profiles of individual cell types within tumors remains challengi
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
Autor:
Sergio Abrignani, David Adams, Melanie de Almeida, ALTUCCI, Lucia, Viren Amin, Ido Amit, Stylianos E, Antonarakis, Samuel Aparicio, Takahiro Arima, Laura Arrigoni, Rob Arts, Vahid Asnafi, Manel Esteller, Jae Bum Bae, Kevin Bassler, Stephan Beck, Benjamin Berkman, Bradley E, Bernstein, Mikhail Bilenky, Adrian Bird, Christoph Bock, Bernhard Boehm, Guillaume Bourque, Charles E, Breeze, Benedikt Brors, David Bujold, Oliver Burren, Marion J, Bussemakers, Adam Butterworth, Elias Campo, Enrique Carrillo de Santa Pau, Lisa Chadwick, Kui Ming Chan, Wei Chen, Tom H, Cheung, Luca Chiapperino, Nak Hyen Choi, Ho Ryun Chung, Laura Clarke, Joseph M, Connors, Philippe Cronet, John Danesh, Manolis Dermitzakis, Gerard Drewes, Pawel Durek, Stephanie Dyke, Tomasz Dylag, Connie J, Eaves, Peter Ebert, Roland Eils, Jürgen Eils, Catherine A, Ennis, Tariq Enver, Elise A, Feingold, Bärbel Felder, Anne Ferguson Smith, Jude Fitzgibbon, Paul Flicek, Roger S, Y, Foo, Peter Fraser, Mattia Frontini, Eileen Furlong, Sitanshu Gakkhar, Nina Gasparoni, Gilles Gasparoni, Daniel H, Geschwind, Petar Glažar, Thomas Graf, Frank Grosveld, Xin Yuan Guan, Roderic Guigo, Ivo G, Gut, Alf Hamann, Bok Ghee Han, R, Alan Harris, Simon Heath, Kristian Helin, Jan G, Hengstler, Alireza Heravi Moussavi, Karl Herrup, Steven Hill, Jason A, Hilton, Benjamin C, Hitz, Bernhard Horsthemke, Ming Hu, Joo Yeon Hwang, Nancy Y, Takashi Ito, Biola Maria Javierre, Sasa Jenko, Thomas Jenuwein, Yann Joly, Steven J, M, Jones, Yae Kanai, Hee Gyung Kang, Aly Karsan, Alexandra K, Kiemer, Song Cheol Kim, Bong Jo Kim, Hyeon Hoe Kim, Hiroshi Kimura, Sarah Kinkley, Filippos Klironomos, In Uk Koh, Myrto Kostadima, Christopher Kressler, Roman Kreuzhuber, Anshul Kundaje, Ralf Küppers, Carolyn Larabell, Paul Lasko, Mark Lathrop, S, Lee, Suman Lee, Hans Lehrach, Elsa Leitão, Thomas Lengauer, Åke Lernmark, David Leslie, Gilberto K, K, Leung, Danny Leung, Markus Loeffler, Yussanne Ma, Antonello Mai, Thomas Manke, Eric R, Marcotte, Marco A, Marra, Joost H, A, Martens, Jose Ignacio Martin Subero, Karen Maschke, Christoph Merten, Aleksandar Milosavljevic, Saverio Minucci, Totai Mitsuyama, Richard A, Moore, Fabian Müller, Andrew J, Mungall, Mihai G, Netea, Karl Nordström, Irene Norstedt, Hiroaki Okae, Vitor Onuchic, Francis Ouellette, Willem Ouwehand, Massimiliano Pagani, Vera Pancaldi, Thomas Pap, Tomi Pastinen, Ronak Patel, Dirk S, Paul, Michael J, Pazin, Pier Giuseppe Pelicci, Anthony G, Phillips, Julia Polansky, Bo Porse, J, Andrew Pospisilik, Shyam Prabhakar, Dena C, Procaccini, Andreas Radbruch, Nikolaus Rajewsky, Vardham Rakyan, Wolf Reik, Bing Ren, David Richardson, Andreas Richter, Daniel Rico, David J, Roberts, Philip Rosenstiel, Mark Rothstein, Abdulrahman Salhab, Hiroyuki Sasaki, John S, Satterlee, Sascha Sauer, Claudia Schacht, Florian Schmidt, Gerd Schmitz, Stefan Schreiber, Christopher Schröder, Dirk Schübeler, Joachim L, Schultze, Ronald P, Schulyer, Marcel Schulz, Martin Seifert, Katsuhiko Shirahige, Reiner Siebert, Thomas Sierocinski, Laura Siminoff, Anupam Sinha, Nicole Soranzo, Salvatore Spicuglia, Mikhail Spivakov, Christian Steidl, Seth Strattan, Michael Stratton, Peter Südbeck, Hao Sun, Narumi Suzuki, Yutaka Suzuki, Amos Tanay, David Torrents, Frederick L, Tyson, Thomas Ulas, Sebastian Ullrich, Toshikazu Ushijima, Alfonso Valencia, Edo Vellenga, Martin Vingron, Chris Wallace, Stefan Wallner, Jörn Walter, Huating Wang, Stephanie Weber, Nina Weiler, Andreas Weller, Andrew Weng, Steven Wilder, Sam M, Wiseman, Angela R, Zhenguo Wu, Jieyi Xiong, Yasuhiro Yamashita, Xinyi Yang, Desmond Y, Yap, Kevin Y, Yip, Stephen Yip, Jae Il Yoo, Daniel Zerbino, Gideon Zipprich
Publikováno v:
Cell, Vol. 167, No 5 (2016) pp. 1145-1149
Cell, 167, 1145-1149
Cell
Cell, 2016, 167 (5), pp.1145--1149. ⟨10.1016/j.cell.2016.11.007⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
Cell, 167, 5, pp. 1145-1149
Cell, 167, 1145-1149
Cell
Cell, 2016, 167 (5), pp.1145--1149. ⟨10.1016/j.cell.2016.11.007⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
Dipòsit Digital de la UB
Universidad de Barcelona
Cell, 167, 5, pp. 1145-1149
Item does not contain fulltext The International Human Epigenome Consortium (IHEC) coordinates the generation of a catalog of high-resolution reference epigenomes of major primary human cell types. The studies now presented (see the Cell Press IHEC w
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::845e48803a7d1e4ee8470ca376fb77af
https://archive-ouverte.unige.ch/unige:90729
https://archive-ouverte.unige.ch/unige:90729
Autor:
Lillian Ashmore, Timur R. Galeev, Manolis Kellis, Walid D. Fakhouri, Piotr Pawliczek, Zhizhuo Zhang, Aleksandar Milosavljevic, Cristian Coarfa, Robert C. Altshuler, Joel Rozowsky, Jéssica Wildgrube Bertol, Fuli Yu, Zhuoyi Huang, Eugene Lurie, Ronak Y. Patel, R. Alan Harris, Vitor Onuchic, Mark Gerstein, Ivenise Carrero
Publikováno v:
PMC
INTRODUCTION A majority of imbalances in DNA methylation between homologous chromosomes in humans are sequence-dependent; the DNA sequence differences between the two chromosomes cause differences in the methylation state of neighboring cytosines on
Autor:
R. Alan Harris, Cristian Coarfa, Kevin Riehle, Vitor Onuchic, Andrew R. Jackson, Sai Lakshmi Subramanian, Aleksandar Milosavljevic, Tim Charnecki, Viren Amin, Sameer Paithankar
Publikováno v:
Nature Communications
Tissue-specific expression of lincRNAs suggests developmental and cell-type-specific functions, yet tissue specificity was established for only a small fraction of lincRNAs. Here, by analysing 111 reference epigenomes from the NIH Roadmap Epigenomics
With improvements in epigenomic profiling assays and with increasing amounts of epigenomic data in public repositories, new opportunities are available to understand normal epigenomes and their cancer-related perturbations. Nascent comparative epigen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0c34351482ab914c76fddf4abf290cca
https://doi.org/10.1016/b978-0-12-800206-3.00007-0
https://doi.org/10.1016/b978-0-12-800206-3.00007-0
Autor:
Bryce K. Allen, Donat Alpar, Viren Amin, Fazila Asmar, Nagi G. Ayad, Anne-Marie Baird, Louise J. Barber, Becky A.S. Bibby, Emma Bolderson, Philippe Bouvet, Frédéric Catez, Leandro Cerchietti, Snehajyoti Chatterjee, Taiping Chen, Andreas I. Constantinou, Stuart J. Conway, Dashyant Dhanak, Jean-Jacques Diaz, Marc Diederich, Xinmin Fan, Brendan Ffrench, Michael F. Gallagher, Marco Gerlinger, Steven D. Gore, Steven G. Gray, Kirsten Grønbæk, David S. Hewings, Holger Heyn, Zhe Jin, Stephanie Kaypee, Yutaka Kondo, Tapas K. Kundu, Florian Laforêts, Matthew W. Lawless, Stephen G. Maher, Somnath Mandal, Virginie Marcel, Aleksandar Milosavljevic, Hannah L. Moody, Atsushi Natsume, Thomas B. Nicholson, Kenneth J. O’Byrne, Shane O’Grady, John J. O’Leary, Fumiharu Ohka, Vitor Onuchic, Vineet Pande, Clara Penas, Li-Xia Peng, Benet Pera, Antoinette Sabrina Perry, Olga Piskareva, Chara A. Pitta, David J. Pocalyko, Thomas Prebet, Chao-Nan Qian, Glen Reid, Derek J. Richard, Timothy P.C. Rooney, Michael Schnekenburger, Alexandra Søgaard, Peter Staller, Raymond L. Stallings, Vasileios Stathias, Gabriel Therizols, Nicolas Veland, Casey M. Wright, Xiaojing Zhang, Wei Zhu, Jiaqi Qian
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::72dd990a6c8ae573244de2d41706a718
https://doi.org/10.1016/b978-0-12-800206-3.00033-1
https://doi.org/10.1016/b978-0-12-800206-3.00033-1
Autor:
Daofeng Li, Tim R. Mercer, Wei Li, Lisa Helbling Chadwick, Jesse R. Dixon, Pouya Kheradpour, Joseph F. Costello, Pradipta R. Ray, John W. Whitaker, Peggy J. Farnham, Angela Tam, Vitor Onuchic, Robert A. Waterland, Misha Bilenky, James A. Thomson, Zhizhuo Zhang, Yaping Liu, Gerald Quon, Andrew J. Mungall, Steven J.M. Jones, Bradley E. Bernstein, Alexander Meissner, Melina Claussnitzer, Charles B. Epstein, Andreas R. Pfenning, Li-Huei Tsai, Laurie A. Boyer, Angela Yen, Ting Wang, Rajinder Kaul, Alireza Heravi-Moussavi, Danny Leung, Noam Shoresh, Michael T. McManus, Michael Stevens, John A. Stamatoyannopoulos, Mukul S. Bansal, Thea D. Tlsty, Susan J. Fisher, Manolis Kellis, Michael Q. Zhang, Aleksandar Milosavljevic, Viren Amin, Martin Hirst, Matthew D. Schultz, Joseph R. Ecker, Xinchen Wang, Jie Wu, Marco A. Marra, Kyle Siebenthall, Wei Wang, Ashwinikumar Kulkarni, Peter J. Sabo, R. Scott Hansen, Jianrong Wang, Michael J. Ziller, Richard A. Moore, Shane Neph, Richard C Sallari, Robert E. Thurman, Paz Polak, Wei Xie, Eric Chuah, Jason Ernst, Bing Ren, Nisha Rajagopal, Anshul Kundaje, Xin Zhou, Yi-Chieh Wu, Shamil R. Sunyaev, Ginell Elliott, Philippe Gascard, Soheil Feizi, Chibo Hong, R. Alan Harris, Ah Ram Kim, Philip L. De Jager, Rosa Karlic, R. David Hawkins, Matthew L. Eaton, Ryan Lister, Rebecca F. Lowdon, Annaick Carles, Elizabeta Gjoneska, David Haussler, Abhishek Sarkar, Nicholas A Sinnott-Armstrong, Wouter Meuleman, Lucas D. Ward, Kai How Farh, Richard Sandstrom, Arthur E. Beaudet, Theresa K. Canfield, Cristian Coarfa, Bo Zhang
Publikováno v:
PMC
Nature
Nature
The reference human genome sequence set the stage for studies of genetic variation and its association with human disease, but epigenomic studies lack a similar reference. To address this need, the NIH Roadmap Epigenomics Consortium generated the lar
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9af3667ce2b614a8ae84b101ff001d0c
https://orcid.org/0000-0003-2450-736X
https://orcid.org/0000-0003-2450-736X