High-resolution reconstruction of a C. elegans ribosome sheds light on evolutionary dynamics and tissue specificity.

Autor: Sehgal E; Department of MCD Biology, University of California at Santa Cruz, Santa Cruz, California 95064, USA., Wohlenberg C; Department of MCD Biology, University of California at Santa Cruz, Santa Cruz, California 95064, USA., Soukup EM; Department of MCD Biology, University of California at Santa Cruz, Santa Cruz, California 95064, USA., Viscardi MJ; Department of MCD Biology, University of California at Santa Cruz, Santa Cruz, California 95064, USA., Serrão VHB; Department of Chemistry and Biochemistry, University of California at Santa Cruz, Santa Cruz, California 95064, USA.; Biomolecular Cryoelectron Microscopy Facility, University of California at Santa Cruz, Santa Cruz, California 95064, USA., Arribere JA; Department of MCD Biology, University of California at Santa Cruz, Santa Cruz, California 95064, USA jarriber@ucsc.edu.; RNA Center, University of California at Santa Cruz, Santa Cruz, California 95064, USA.; Genomics Institute, University of California at Santa Cruz, Santa Cruz, California 95064, USA.

Publikováno v: RNA (New York, N.Y.) [RNA] 2024 Oct 16; Vol. 30 (11), pp. 1513-1528. Date of Electronic Publication: 2024 Oct 16.

Poly(a) selection introduces bias and undue noise in direct RNA-sequencing.

Autor: Viscardi MJ; Department of Molecular, Cellular and Developmental Biology, University of California at Santa Cruz, Santa Cruz, CA, USA., Arribere JA; Department of Molecular, Cellular and Developmental Biology, University of California at Santa Cruz, Santa Cruz, CA, USA. jarriber@ucsc.edu.

Publikováno v: BMC genomics [BMC Genomics] 2022 Jul 22; Vol. 23 (1), pp. 530. Date of Electronic Publication: 2022 Jul 22.

Comprehensive assessment of mRNA isoform detection methods for long-read sequencing data.

Autor: Su, Yaqi, Yu, Zhejian, Jin, Siqian, Ai, Zhipeng, Yuan, Ruihong, Chen, Xinyi, Xue, Ziwei, Guo, Yixin, Chen, Di, Liang, Hongqing, Liu, Zuozhu, Liu, Wanlu

Publikováno v: Nature Communications; 5/10/2024, Vol. 15 Issue 1, p1-19, 19p

Quantification of Poly(A) Tail Length and Terminal Modifications Using Direct RNA Sequencing.

Autor: Gupta A; Reproductive and Developmental Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Durham, NC, USA., Papas BN; Integrative Bioinformatics, Biostatistics and Computational Biology Branch, National Institute of Environmental Health Sciences, National Institutes of Health, Durham, NC, USA., Baptissart M; Reproductive and Developmental Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Durham, NC, USA., Morgan M; Reproductive and Developmental Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Durham, NC, USA. marcos.morgan@nih.gov.

Publikováno v: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2024; Vol. 2723, pp. 253-266.