Draft Genome Sequence of Streptomyces sp. Strain ventii, Isolated from a Microbial Mat near Hydrothermal Vents within the Axial Seamount in the Pacific Ocean, and Resequencing of the Type Strains Streptomyces lonarensis NCL 716 and Streptomyces bohaiensis 11A07.

Autor: Loughran RM; Department of Biology, Southern Oregon University, Ashland, Oregon, USA., Mitchell EA; Department of Pharmaceutical Sciences, Oregon State University, Corvallis, Oregon, USA., Vining OB; Department of Pharmaceutical Sciences, Oregon State University, Corvallis, Oregon, USA., Gallegos DA; Department of Pharmaceutical Sciences, Oregon State University, Corvallis, Oregon, USA., Deadmond MC; Department of Biology, Southern Oregon University, Ashland, Oregon, USA., Wasson BJ; Department of Biology, Southern Oregon University, Ashland, Oregon, USA., Pfannmuller KM; Department of Biology, Southern Oregon University, Ashland, Oregon, USA., Paddock BE; Department of Biology, Southern Oregon University, Ashland, Oregon, USA., Koyack MJ; Department of Chemistry, Southern Oregon University, Ashland, Oregon, USA., Oline DK; Department of Biology, Southern Oregon University, Ashland, Oregon, USA., Ushijima B; Smithsonian Marine Station, Fort Pierce, Florida, USA., Saw JH; Department of Biological Sciences, The George Washington University, Washington, DC, USA., McPhail KL; Department of Pharmaceutical Sciences, Oregon State University, Corvallis, Oregon, USA., Videau P; Department of Biology, Southern Oregon University, Ashland, Oregon, USA videaup@sou.edu.

Publikováno v: Microbiology resource announcements [Microbiol Resour Announc] 2020 Aug 06; Vol. 9 (32). Date of Electronic Publication: 2020 Aug 06.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Autor: Wang M; Computer Science and Engineering, UC San Diego, La Jolla, United States.; Center for Computational Mass Spectrometry, UC San Diego, La Jolla, United States., Carver JJ; Computer Science and Engineering, UC San Diego, La Jolla, United States.; Center for Computational Mass Spectrometry, UC San Diego, La Jolla, United States., Phelan VV; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Sanchez LM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Garg N; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Peng Y; Department of Chemistry and Biochemistry, UC San Diego, La Jolla, United States., Nguyen DD; Department of Chemistry and Biochemistry, UC San Diego, La Jolla, United States., Watrous J; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Kapono CA; Department of Chemistry and Biochemistry, UC San Diego, La Jolla, United States., Luzzatto-Knaan T; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Porto C; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Bouslimani A; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Melnik AV; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Meehan MJ; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Liu WT; Department of Microbiology and Immunology, Stanford University, Palo Alto, United States., Crüsemann M; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Boudreau PD; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Esquenazi E; Sirenas Marine Discovery, San Diego, United States., Sandoval-Calderón M; Centro de Ciencias Genómicas, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mexico., Kersten RD; Salk Institute, Salk Institute, La Jolla, United States., Pace LA; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Quinn RA; Biology Department, San Diego State University, San Diego, United States., Duncan KR; Scottish Association for Marine Science, Scottish Marine Institute, Oban, United Kingdom.; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Hsu CC; Department of Chemistry and Biochemistry, UC San Diego, La Jolla, United States., Floros DJ; Department of Chemistry and Biochemistry, UC San Diego, La Jolla, United States., Gavilan RG; Center for Drug Discovery and Biodiversity, INDICASAT, City of Knowledge, Panama., Kleigrewe K; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Northen T; Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, United States., Dutton RJ; FAS Center for Systems Biology, Harvard, Cambridge, United States., Parrot D; Produits naturels - Synthèses - Chimie Médicinale, University of Rennes 1, Rennes Cedex, France., Carlson EE; Chemistry, University of Minnesota, Minneapolis, United States., Aigle B; Dynamique des Génomes et Adaptation Microbienne, University of Lorraine, Vandœuvre-lès-Nancy, France., Michelsen CF; Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark., Jelsbak L; Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark., Sohlenkamp C; Centro de Ciencias Genómicas, Universidad Nacional Autonoma de Mexico, Cuernavaca, Mexico., Pevzner P; Center for Computational Mass Spectrometry, UC San Diego, La Jolla, United States.; Computer Science and Engineering, UC San Diego, La Jolla, United States., Edlund A; Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, United States.; School of Dentistry, UC Los Angeles, Los Angeles, United States., McLean J; Department of Periodontics, University of Washington, Seattle, United States.; School of Dentistry, UC Los Angeles, Los Angeles, United States., Piel J; Institute of Microbiology, ETH Zurich, Zurich, Switzerland., Murphy BT; Department of Medicinal Chemistry and Pharmacognosy, University of Illinois Chicago, Chicago, United States., Gerwick L; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Liaw CC; Department of Marine Biotechnology and Resources, National Sun Yat-sen University, Kaohsiung, Taiwan., Yang YL; Agricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan., Humpf HU; Institute of Food Chemistry, University of Münster, Münster, Germany., Maansson M; Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark., Keyzers RA; School of Chemical & Physical Sciences, and Centre for Biodiscovery, Victoria University of Wellington, Wellington, New Zealand., Sims AC; Gillings School of Global Public Health, Department of Epidemiology, UNC Chapel Hill, Chapel Hill, United States., Johnson AR; Department of Chemistry, Indiana University, Bloomington, United States., Sidebottom AM; Department of Chemistry, Indiana University, Bloomington, United States., Sedio BE; Smithsonian Tropical Research Institute, Ancón, Panama.; Center for Drug Discovery and Biodiversity, INDICASAT, City of Knowledge, Panama., Klitgaard A; Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark., Larson CB; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States.; Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., P CAB; Center for Drug Discovery and Biodiversity, INDICASAT, City of Knowledge, Panama., Torres-Mendoza D; Center for Drug Discovery and Biodiversity, INDICASAT, City of Knowledge, Panama., Gonzalez DJ; Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States.; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Silva DB; School of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo, São Paulo, Brazil.; Centro de Ciencias Biologicas e da Saude, Universidade Fderal de Mato Grosso do Sul, Campo Grande, Brazil., Marques LM; School of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo, São Paulo, Brazil., Demarque DP; School of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo, São Paulo, Brazil., Pociute E; Sirenas Marine Discovery, San Diego, United States., O'Neill EC; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Briand E; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States.; UMR CNRS 6553 ECOBIO, University of Rennes 1, Rennes Cedex, France., Helfrich EJN; Institute of Microbiology, ETH Zurich, Zurich, Switzerland., Granatosky EA; Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, United States., Glukhov E; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Ryffel F; Institute of Microbiology, ETH Zurich, Zurich, Switzerland., Houson H; Sirenas Marine Discovery, San Diego, United States., Mohimani H; Center for Computational Mass Spectrometry, UC San Diego, La Jolla, United States., Kharbush JJ; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Zeng Y; Department of Chemistry and Biochemistry, UC San Diego, La Jolla, United States., Vorholt JA; Institute of Microbiology, ETH Zurich, Zurich, Switzerland., Kurita KL; PBSci-Chemistry & Biochemistry Department, UC Santa Cruz, Santa Cruz, United States., Charusanti P; Department of Bioengineering, UC San Diego, La Jolla, United States., McPhail KL; Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, United States., Nielsen KF; Department of Systems Biology, Technical University of Denmark, Lyngby, Denmark., Vuong L; Sirenas Marine Discovery, San Diego, United States., Elfeki M; Department of Medicinal Chemistry and Pharmacognosy, University of Illinois Chicago, Chicago, United States., Traxler MF; Department of Plant and Microbial Biology, UC Berkeley, Berkeley, United States., Engene N; Department of Biological Sciences, Florida International University, Miami, United States., Koyama N; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Vining OB; Department of Pharmaceutical Sciences, College of Pharmacy, Oregon State University, Corvallis, United States., Baric R; Gillings School of Global Public Health, Department of Epidemiology, UNC Chapel Hill, Chapel Hill, United States., Silva RR; School of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo, São Paulo, Brazil., Mascuch SJ; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Tomasi S; Produits naturels - Synthèses - Chimie Médicinale, University of Rennes 1, Rennes Cedex, France., Jenkins S; Genome Dynamics, Lawrence Berkeley National Laboratory, Berkeley, United States., Macherla V; Sirenas Marine Discovery, San Diego, United States., Hoffman T; Department of Pharmaceutical Biotechnology, Helmholtz Institute for Pharmaceutical Research Saarland, Saarbrücken, Germany., Agarwal V; Center for Oceans and Human Health, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Williams PG; Department of Chemistry, University of Hawaii at Manoa, Honolulu, United States., Dai J; Department of Chemistry, University of Hawaii at Manoa, Honolulu, United States., Neupane R; Department of Chemistry, University of Hawaii at Manoa, Honolulu, United States., Gurr J; Department of Chemistry, University of Hawaii at Manoa, Honolulu, United States., Rodríguez AMC; School of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo, São Paulo, Brazil., Lamsa A; Division of Biological Sciences, UC San Diego, La Jolla, United States., Zhang C; Department of Nanoengineering, UC San Diego, La Jolla, United States., Dorrestein K; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Duggan BM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Almaliti J; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Allard PM; School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland., Phapale P; Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany., Nothias LF; Institut de Chimie des Substances Naturelles, CNRS-ICSN, UPR 2301, Labex CEBA, University of Paris-Saclay, Gif-sur-Yvette, France., Alexandrov T; Structural and Computational Biology, European Molecular Biology Laboratory, Heidelberg, Germany., Litaudon M; Institut de Chimie des Substances Naturelles, CNRS-ICSN, UPR 2301, Labex CEBA, University of Paris-Saclay, Gif-sur-Yvette, France., Wolfender JL; School of Pharmaceutical Sciences, University of Geneva, Geneva, Switzerland., Kyle JE; Biological Sciences, Pacific Northwest National Laboratory, Richland, United States., Metz TO; Biological Sciences, Pacific Northwest National Laboratory, Richland, United States., Peryea T; National Center for Advancing Translational Sciences, National Institute of Health, Rockville, United States., Nguyen DT; National Center for Advancing Translational Sciences, National Institute of Health, Rockville, United States., VanLeer D; National Center for Advancing Translational Sciences, National Institute of Health, Rockville, United States., Shinn P; National Center for Advancing Translational Sciences, National Institute of Health, Rockville, United States., Jadhav A; National Center for Advancing Translational Sciences, National Institute of Health, Rockville, United States., Müller R; Department of Pharmaceutical Biotechnology, Helmholtz Institute for Pharmaceutical Research Saarland, Saarbrücken, Germany., Waters KM; Biological Sciences, Pacific Northwest National Laboratory, Richland, United States., Shi W; School of Dentistry, UC Los Angeles, Los Angeles, United States., Liu X; Institute of Microbiology, Chinese Academy of Sciences, Beijing, China., Zhang L; Institute of Microbiology, Chinese Academy of Sciences, Beijing, China., Knight R; Department of Pediatrics, UC San Diego, La Jolla, United States., Jensen PR; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Palsson BO; Department of Bioengineering, UC San Diego, La Jolla, United States., Pogliano K; Division of Biological Sciences, UC San Diego, La Jolla, United States., Linington RG; PBSci-Chemistry & Biochemistry Department, UC Santa Cruz, Santa Cruz, United States., Gutiérrez M; Center for Drug Discovery and Biodiversity, INDICASAT, City of Knowledge, Panama., Lopes NP; School of Pharmaceutical Sciences of Ribeirao Preto, University of São Paulo, São Paulo, Brazil., Gerwick WH; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States.; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Moore BS; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States.; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States.; Center for Oceans and Human Health, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States.; Center for Marine Biotechnology and Biomedicine, Scripps Institute of Oceanography, UC San Diego, La Jolla, United States.; Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States., Bandeira N; Center for Computational Mass Spectrometry, UC San Diego, La Jolla, United States.; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States.; Skaggs School of Pharmacy and Pharmaceutical Sciences, UC San Diego, La Jolla, United States.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2016 Aug 09; Vol. 34 (8), pp. 828-837.

New species and new combinations in the genus Paraisaria (Hypocreales, Ophiocordycipitaceae) from the U.S.A., supported by polyphasic analysis.

Autor: Tehan, Richard M.^1,2 rmtehan@utica.edu, Dooley, Connor B.^1,3, Barge, Edward G.⁴, McPhail, Kerry L.¹, Spatafora, Joseph W.³

Publikováno v: MycoKeys. 2023, Issue 100, p69-94. 26p.

Molecular networking-guided isolation strategy of a new C-glycosyl flavone rotamer from Stellaria alsine and evaluation of anti-inflammatory and antioxidant activities.

Autor: Kim, Chang-Kwon¹ (AUTHOR), Yu, Soojung² (AUTHOR), Lee, Mina^1,2 (AUTHOR) minalee@scnu.ac.kr

Publikováno v: Metabolomics. Sep2023, Vol. 19 Issue 9, p1-11. 11p.

Fast screening and identification of illegal adulteration in dietary supplements and herbal medicines using molecular networking with deep-learning-based similarity algorithms.

Autor: Sheng, Yanghao^1,2 (AUTHOR), Xue, Ying^1,2 (AUTHOR), Wang, Jue^1,2 (AUTHOR), Liu, Shao^1,2 (AUTHOR) liushao999@csu.edu.cn, Jiang, Yueping^1,2 (AUTHOR) jiangyueping@csu.edu.cn

Publikováno v: Analytical & Bioanalytical Chemistry. Jul2023, Vol. 415 Issue 16, p3285-3293. 9p.