Zobrazeno 1 - 10
of 39
pro vyhledávání: '"Viktoria Nizhynska"'
Autor:
Akiko Satake, Ryosuke Imai, Takeshi Fujino, Sou Tomimoto, Kayoko Ohta, Mohammad Na'iem, Sapto Indrioko, Widiyatno Widiyatno, Susilo Purnomo, Almudena Molla Morales, Viktoria Nizhynska, Naoki Tani, Yoshihisa Suyama, Eriko Sasaki, Masahiro Kasahara
Publikováno v:
eLife, Vol 12 (2024)
The rates of appearance of new mutations play a central role in evolution. However, mutational processes in natural environments and their relationship with growth rates are largely unknown, particular in tropical ecosystems with high biodiversity. H
Externí odkaz:
https://doaj.org/article/7752b59b6a76409cbb9c4882bbecf05a
Publikováno v:
PLoS Genetics, Vol 19, Iss 5, p e1010728 (2023)
Gene-body methylation (gbM) refers to sparse CG methylation of coding regions, which is especially prominent in evolutionarily conserved house-keeping genes. It is found in both plants and animals, but is directly and stably (epigenetically) inherite
Externí odkaz:
https://doaj.org/article/592ddc960b27450b856ebe49b144bcd2
Publikováno v:
PLoS Genetics, Vol 18, Iss 9, p e1010345 (2022)
Genome-wide association studies (GWAS) have revealed that the striking natural variation for DNA CHH-methylation (mCHH; H is A, T, or C) of transposons has oligogenic architecture involving major alleles at a handful of known methylation regulators.
Externí odkaz:
https://doaj.org/article/86fce17a2ec444d3925220e59e86c836
Autor:
Pieter Clauw, Envel Kerdaffrec, Joanna Gunis, Ilka Reichardt-Gomez, Viktoria Nizhynska, Stefanie Koemeda, Jakub Jez, Magnus Nordborg
Publikováno v:
eLife, Vol 11 (2022)
We investigated early vegetative growth of natural Arabidopsis thaliana accessions in cold, nonfreezing temperatures, similar to temperatures these plants naturally encounter in fall at northern latitudes. We found that accessions from northern latit
Externí odkaz:
https://doaj.org/article/0880fd47080d44d1bbc8b2d17cb221a1
Autor:
Fernando A. Rabanal, Terezie Mandáková, Luz M. Soto-Jiménez, Robert Greenhalgh, David L. Parrott, Stefan Lutzmayer, Joshua G. Steffen, Viktoria Nizhynska, Richard Mott, Martin A. Lysak, Richard M. Clark, Magnus Nordborg
Publikováno v:
Genome Biology, Vol 18, Iss 1, Pp 1-15 (2017)
Abstract Background Ribosomal RNA (rRNA) accounts for the majority of the RNA in eukaryotic cells, and is encoded by hundreds to thousands of nearly identical gene copies, only a subset of which are active at any given time. In Arabidopsis thaliana,
Externí odkaz:
https://doaj.org/article/cf2ac61c586d4468906a152697e1f51f
Autor:
Fernando A. Rabanal, Viktoria Nizhynska, Terezie Mandáková, Polina Yu. Novikova, Martin A. Lysak, Richard Mott, Magnus Nordborg
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 7, Iss 4, Pp 1201-1209 (2017)
The considerable genome size variation in Arabidopsis thaliana has been shown largely to be due to copy number variation (CNV) in 45S ribosomal RNA (rRNA) genes. Surprisingly, attempts to map this variation by means of genome-wide association studies
Externí odkaz:
https://doaj.org/article/4a7e3c6d30834a1f8c6d671f36d26741
Autor:
Danièle L Filiault, Evangeline S Ballerini, Terezie Mandáková, Gökçe Aköz, Nathan J Derieg, Jeremy Schmutz, Jerry Jenkins, Jane Grimwood, Shengqiang Shu, Richard D Hayes, Uffe Hellsten, Kerrie Barry, Juying Yan, Sirma Mihaltcheva, Miroslava Karafiátová, Viktoria Nizhynska, Elena M Kramer, Martin A Lysak, Scott A Hodges, Magnus Nordborg
Publikováno v:
eLife, Vol 7 (2018)
The columbine genus Aquilegia is a classic example of an adaptive radiation, involving a wide variety of pollinators and habitats. Here we present the genome assembly of A. coerulea ‘Goldsmith’, complemented by high-coverage sequencing data from
Externí odkaz:
https://doaj.org/article/19fe59784c074f6cbb4719fe5af0dba0
Autor:
Envel Kerdaffrec, Danièle L Filiault, Arthur Korte, Eriko Sasaki, Viktoria Nizhynska, Ümit Seren, Magnus Nordborg
Publikováno v:
eLife, Vol 5 (2016)
Seed dormancy is a complex life history trait that determines the timing of germination and is crucial for local adaptation. Genetic studies of dormancy are challenging, because the trait is highly plastic and strongly influenced by the maternal envi
Externí odkaz:
https://doaj.org/article/46dfbd73502643119e66aea4f7a0665a
Publikováno v:
Biology, Vol 1, Iss 2, Pp 395-410 (2012)
Transposable elements (TEs) are common mobile DNA elements present in nearly all genomes. Since the movement of TEs within a genome can sometimes have phenotypic consequences, an accurate report of TE actions is desirable. To this end, we developed T
Externí odkaz:
https://doaj.org/article/904f9ae38ae041a1bf8d21ed7ffc5f72
Autor:
Quan Long, Daniel C Jeffares, Qingrun Zhang, Kai Ye, Viktoria Nizhynska, Zemin Ning, Chris Tyler-Smith, Magnus Nordborg
Publikováno v:
PLoS ONE, Vol 6, Iss 1, p e15292 (2011)
With the advance of next-generation sequencing (NGS) technologies, increasingly ambitious applications are becoming feasible. A particularly powerful one is the sequencing of polymorphic, pooled samples. The pool can be naturally occurring, as in the
Externí odkaz:
https://doaj.org/article/5355845643504218bd465bc39932f029