Benchmarking second and third-generation sequencing platforms for microbial metagenomics

Autor: Victoria Meslier, Benoit Quinquis, Kévin Da Silva, Florian Plaza Oñate, Nicolas Pons, Hugo Roume, Mircea Podar, Mathieu Almeida

Publikováno v: Scientific Data, Vol 9, Iss 1, Pp 1-9 (2022)

Measurement(s) mock community • Metagenomic profiling Technology Type(s) Illumina HiSeq 3000 • ThermoFisher Ion Proton and GeneStudio S5 • MGI DNBseq G400 and T7 • Oxford Nanopore Sequencing • PacBio Sequel System • Genome mapping and ass

Externí odkaz: https://doaj.org/article/f4f97522106242f68e748637e3e3e923

Trophic Selective Pressures Organize the Composition of Endolithic Microbial Communities From Global Deserts

Autor: Evan B. Qu, Chris R. Omelon, Aharon Oren, Victoria Meslier, Don A. Cowan, Gillian Maggs-Kölling, Jocelyne DiRuggiero

Publikováno v: Frontiers in Microbiology, Vol 10 (2020)

Studies of microbial biogeography are often convoluted by extremely high diversity and differences in microenvironmental factors such as pH and nutrient availability. Desert endolithic (inside rock) communities are relatively simple ecosystems that c

Externí odkaz: https://doaj.org/article/9ecf2c82313542e9b64e7de55054d896

In Vitro Modelling of Oral Microbial Invasion in the Human Colon

Autor: Lucie Etienne-Mesmin, Victoria Meslier, Ophélie Uriot, Elora Fournier, Charlotte Deschamps, Sylvain Denis, Aymeric David, Sarah Jegou, Christian Morabito, Benoit Quinquis, Florence Thirion, Florian Plaza Oñate, Emmanuelle Le Chatelier, S. Dusko Ehrlich, Stéphanie Blanquet-Diot, Mathieu Almeida

Publikováno v: Microbiology Spectrum
Microbiology Spectrum, 2023, 11 (2), ⟨10.1128/spectrum.04344-22⟩
The International Human Microbiome Consortium Congress (IHMC)
The International Human Microbiome Consortium Congress (IHMC), Nov 2022, Kobe, Japan

International audience; Recent advances in the human microbiome characterization have revealed significant oral microbial detection in stools of dysbiotic patients. However, little is known about the potential interactions of these invasive oral micr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f1a29183feeaf0f1e1b757bcb479db92
https://hal.inrae.fr/hal-04064299

Mediterranean diet consumption affects the endocannabinoid system in overweight and obese subjects: possible links with gut microbiome, insulin resistance and inflammation

Autor: Nicolas Pons, Danilo Ercolini, Silvia Tagliamonte, Rosalia Ferracane, Marilena Vitale, Maria A Gallo, Paola Vitaglione, Victoria Meslier, Manolo Laiola

Publikováno v: European Journal of Nutrition

Purpose To investigate whether a Mediterranean diet (MD) affected the plasma concentrations of endocannabinoids (ECs), N-acylethanolamines (NAEs) and their specific ratios in subjects with lifestyle risk factors for metabolic diseases. To identify th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f07b47baa664344b5a08c1b76df4e9c7
http://europepmc.org/articles/PMC8437855

Both Disease Activity and HLA-B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients

Autor: Magali Berland, Victoria Meslier, Samar Berreira Ibraim, Emmanuelle Le Chatelier, Nicolas Pons, Nicolas Maziers, Florence Thirion, Franck Gauthier, Florian Plaza Oñate, Jean‐Pierre Furet, Ariane Leboime, Roula Said‐Nahal, Florence Levenez, Nathalie Galleron, Benoît Quinquis, Philippe Langella, Stanislav Dusko Ehrlich, Maxime Breban

Publikováno v: Arthritis and Rheumatology (hoboken, N.j.)
Arthritis and Rheumatology (hoboken, N.j.), 2023, 75 (1), pp.41-52. ⟨10.1002/art.42289⟩

We gratefully acknowledge the kind contribution of Mrs. Nabila Yasmine Domingo-Saidji from the Clinical Research Unit of Paris Ile-de-France Ouest (URCPO), who supervised the administrative paperwork and helped us to manage ethical issues related to

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b5abad39ac59dd72b38f923046e5065a
https://pubmed.ncbi.nlm.nih.gov/35818337