Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations

Autor: M. Elise Lauterbur, Maria Izabel A. Cavassim, Ariella L. Gladstein, Graham Gower, Nathaniel S. Pope, Georgia Tsambos, Jeff Adrion, Saurabh Belsare, Arjun Biddanda, Victoria Caudill, Jean Cury, Ignacio Echevarria, Benjamin C. Haller, Ahmed R. Hasan, Xin Huang, Leonardo Nicola Martin Iasi, Ekaterina Noskova, Jana Obšteter, Vitor Antonio Corrêa Pavinato, Alice Pearson, David Peede, Manolo F. Perez, Murillo F. Rodrigues, Chris C. R. Smith, Jeffrey P. Spence, Anastasia Teterina, Silas Tittes, Per Unneberg, Juan Manuel Vazquez, Ryan K. Waples, Anthony Wilder Wohns, Yan Wong, Franz Baumdicker, Reed A. Cartwright, Gregor Gorjanc, Ryan N. Gutenkunst, Jerome Kelleher, Andrew D. Kern, Aaron P. Ragsdale, Peter L. Ralph, Daniel R. Schrider, Ilan Gronau

Publikováno v: Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLIFE, vol. 12, no. RP84874, pp. 1-20 . https://doi.org/10.7554/eLife.84874
eLife
Lauterbur, M E, Cavassim, M I A, Gladstein, A L, Gower, G, Pope, N S, Tsambos, G, Adrion, J, Belsare, S, Biddanda, A, Caudill, V, Cury, J, Echevarria, I, Haller, B C, Hasan, A R, Huang, X, Iasi, L N M, Noskova, E, Obsteter, J, Pavinato, V A C, Pearson, A, Peede, D, Perez, M F, Rodrigues, M F, Smith, C C R, Spence, J P, Teterina, A, Tittes, S, Unneberg, P, Vazquez, J M, Waples, R K, Wohns, A W, Wong, Y, Baumdicker, F, Cartwright, R A, Gorjanc, G, Gutenkunst, R N, Kelleher, J, Kern, A D, Ragsdale, A P, Ralph, P L, Schrider, D R & Gronau, I 2023, ' Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations ', eLife, vol. 12, RP84874 . https://doi.org/10.7554/eLife.84874

Simulation is a key tool in population genetics for both methods development and empirical research, but producing simulations that recapitulate the main features of genomic data sets remains a major obstacle. Today, more realistic simulations are po

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