Zobrazeno 1 - 10
of 23
pro vyhledávání: '"Vicky Choi"'
Autor:
Vicky Choi
We study the relation between the Ising problem Hamiltonian parameters and the minimum spectral gap (min-gap) of the system Hamiltonian in the Ising-based quantum annealer. The main argument we use in this paper to assess the performance of a QA algo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c961d588ca7f22e268a1dd9f18cde7a4
Autor:
Vicky Choi
Publikováno v:
Quantum Information and Computation. 11:638-648
One of the most important questions in studying quantum computation is: whether a quantum computer can solve NP-complete problems more efficiently than a classical computer? In 2000, Farhi, et al. (Science, 292(5516):472--476, 2001) proposed the adia
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8c215c55d3364d8403055a789688ead2
https://doi.org/10.26421/qic11.7-8-7
https://doi.org/10.26421/qic11.7-8-7
Autor:
Jeffrey D. Riley, Vicky Choi, Jack J. Lin, Ronald C. Kim, Steven C. Cramer, David L. Franklin, Devin K. Binder
Publikováno v:
Riley, Jeffrey D; Franklin, David L; Choi, Vicky; Kim, Ronald C; Binder, Devin K; Cramer, Steven C; et al.(2010). Altered white matter integrity in temporal lobe epilepsy: association with cognitive and clinical profiles.. Epilepsia, 51(4), 536-545. doi: 10.1111/j.1528-1167.2009.02508.x. UC Irvine: Retrieved from: http://www.escholarship.org/uc/item/3vs6h7mb
Author(s): Riley, Jeffrey D; Franklin, David L; Choi, Vicky; Kim, Ronald C; Binder, Devin K; Cramer, Steven C; Lin, Jack J | Abstract: PurposeDiffusion tensor imaging (DTI) studies have reported substantial white matter abnormalities in patients with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5ba4d7c322bed2a45b697713f3845429
https://doi.org/10.1111/j.1528-1167.2009.02508.x
https://doi.org/10.1111/j.1528-1167.2009.02508.x
Autor:
Robert Warren, Zhenyu Yang, Chunfang Zheng, Adriana Muñoz, David Sankoff, Zaky Adam, Vicky Choi, Qian Zhu
Publikováno v:
Journal of Computer Science and Technology. 25:10-25
As genomes evolve over hundreds of millions years, the chromosomes become rearranged, with segments of some chromosomes inverted, while other chromosomes reciprocally exchange chunks from their ends. These rearrangements lead to the scrambling of the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f694822cddd62b24b30a6c5ed2a3baf3
https://doi.org/10.1007/s11390-010-9301-9
https://doi.org/10.1007/s11390-010-9301-9
Publikováno v:
IEEE/ACM Transactions on Computational Biology and Bioinformatics. 6:213-220
We present a parameterized definition of gene clusters that allows us to control the emphasis placed on conserved order within a cluster. Though motivated by biological rather than mathematical considerations, this parameter turns out to be closely r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eda0c2f807cad72d90b28345bd757c32
https://doi.org/10.1109/tcbb.2008.121
https://doi.org/10.1109/tcbb.2008.121
Autor:
Navin Goyal, Vicky Choi
Publikováno v:
Algorithmica. 48:343-362
Many proteins undergo conformational changes to perform their functions. A simple mechanism of conformational change in proteins is a rigid domain motion, in which two parts of a structure move rigidly with respect to each other. The identification o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4d422bc6af8c53b0ee5eff6760b40776
https://doi.org/10.1007/s00453-007-0186-0
https://doi.org/10.1007/s00453-007-0186-0
Autor:
Vicky Choi
Publikováno v:
Journal of Chemical Information and Modeling. 46:438-444
A conformation of a molecule is defined by the relative positions of atoms and by the chirality of asymmetric atoms in the molecule. The three main representations for conformations of molecules are Cartesian coordinates, a distance geometry descript
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1059b8d11b867f48786cb200fc8249b7
https://doi.org/10.1021/ci050253h
https://doi.org/10.1021/ci050253h
Autor:
Vicky Choi
Publikováno v:
Chemistry & Biodiversity. 2:1517-1524
In this paper, we present a new algorithm, which is based on an efficient heuristic for local search, for rigid protein-small-molecule docking. We tested our algorithm, called Yucca, on the recent 100-complex benchmark, using the conformer generator
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::088cf7a55174a7f51debeb534d2c5b90
https://doi.org/10.1002/cbdv.200590123
https://doi.org/10.1002/cbdv.200590123
Autor:
Martin Farach-Colton, Vicky Choi
Publikováno v:
Gene. 320:165-176
We propose an assembly algorithm {\sc Barnacle} for sequences generated by the clone-based approach. We illustrate our approach by assembling the human genome. Our novel method abandons the original physical-mapping-first framework. As we show, {\sc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c3dcaa54ace72cb5c3ae6caea91f71d7
https://doi.org/10.1016/s0378-1119(03)00825-4
https://doi.org/10.1016/s0378-1119(03)00825-4
Autor:
Vicky Choi, Mordecai J. Golin
Publikováno v:
Algorithmica. 31:240-290
Lopsided trees are rooted, ordered trees in which the length of an edge from a node to its i th child depends upon the value of i . These trees model a variety of problems and have therefore been extensively studied. In this paper we combine analytic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f2dbc6fb05c1e9447b38fe20113fc838
https://doi.org/10.1007/s00453-001-0063-1
https://doi.org/10.1007/s00453-001-0063-1