Zobrazeno 1 - 10
of 36
pro vyhledávání: '"Veronika Vonstein"'
Autor:
Bruce Parrello, Rory Butler, Philippe Chlenski, Robert Olson, Jamie Overbeek, Gordon D. Pusch, Veronika Vonstein, Ross Overbeek
Publikováno v:
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)
Abstract Background Recent advances in high-volume sequencing technology and mining of genomes from metagenomic samples call for rapid and reliable genome quality evaluation. The current release of the PATRIC database contains over 220,000 genomes, a
Externí odkaz:
https://doaj.org/article/a6f264edc5cb4588b433dd56c7d93fdc
Autor:
Ramy K Aziz, Scott Devoid, Terrence Disz, Robert A Edwards, Christopher S Henry, Gary J Olsen, Robert Olson, Ross Overbeek, Bruce Parrello, Gordon D Pusch, Rick L Stevens, Veronika Vonstein, Fangfang Xia
Publikováno v:
PLoS ONE, Vol 7, Iss 10, p e48053 (2012)
The remarkable advance in sequencing technology and the rising interest in medical and environmental microbiology, biotechnology, and synthetic biology resulted in a deluge of published microbial genomes. Yet, genome annotation, comparison, and model
Externí odkaz:
https://doaj.org/article/5f62a117c55546dab4d00f676c98ad3a
Autor:
Ronald W. Kenyon, Veronika Vonstein, Hyunseung Yoo, Thomas Brettin, Alice R. Wattam, Chunhong Mao, Robert Olson, Emily M. Dietrich, Margo VanOeffelen, Andrew S. Warren, James J. Davis, Derya Aytan-Aktug, Marcus Nguyen, Rick Stevens, Dustin Machi, Gordon D. Pusch, Maulik Shukla
Publikováno v:
Brief Bioinform
Antimicrobial resistance (AMR) is a major global health threat that affects millions of people each year. Funding agencies worldwide and the global research community have expended considerable capital and effort tracking the evolution and spread of
Autor:
Alice R. Wattam, Andrew S. Warren, James J. Davis, Rick Stevens, Eric K. Nordberg, Chunhong Mao, Svetlana Gerdes, Fangfang Xia, John Santerre, Thomas Brettin, Dustin Machi, Ramy K. Aziz, Margo VanOeffelen, Terry Disz, Gordon D. Pusch, Maulik Shukla, Rida Assaf, Hyunseung Yoo, Emily M. Dietrich, Christopher Bun, Gary J. Olsen, Veronika Vonstein, Dionysios A. Antonopoulos, Neal Conrad, Daniel E. Murphy-Olson, Bruce Parrello, Ronald W. Kenyon, Ross Overbeek, Robert Olson
Publikováno v:
Briefings in Bioinformatics
The Pathosystems Resource Integration Center (PATRIC, www.patricbrc.org) is designed to provide researchers with the tools and services that they need to perform genomic and other ‘omic’ data analyses. In response to mounting concern over antimic
Autor:
Ross Overbeek, Hyunseung Yoo, Robert Olson, Emily M. Dietrich, Alice R. Wattam, Bruce Parrello, Ronald W. Kenyon, Andrew S. Warren, James J. Davis, Marcus Nguyen, Maulik Shukla, Ralph Butler, Ramy K. Aziz, Jamie C. Overbeek, Rick Stevens, Andrew Guard, Allan Dickerman, Daniel E. Murphy-Olson, Veronika Vonstein, Svetlana Gerdes, Fangfang Xia, Gary J. Olsen, Margo VanOeffelen, Philippe Chlenski, Dawen Xie, Chunhong Mao, Dustin Machi, Rory Butler, Joseph L. Gabbard, Gordon D. Pusch, Chris Thomas, Neal Conrad, Thomas Brettin, Eric K. Nordberg
Publikováno v:
Nucleic Acids Research.
The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacte
Autor:
Veronika Vonstein, Bruce Parrello, Jamie C. Overbeek, Ross Overbeek, Philippe Chlenski, Robert Olson, Rory Butler, Gordon D. Pusch
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-9 (2019)
Background Recent advances in high-volume sequencing technology and mining of genomes from metagenomic samples call for rapid and reliable genome quality evaluation. The current release of the PATRIC database contains over 220,000 genomes, and curren
Autor:
Alice R, Wattam, Thomas, Brettin, James J, Davis, Svetlana, Gerdes, Ronald, Kenyon, Dustin, Machi, Chunhong, Mao, Robert, Olson, Ross, Overbeek, Gordon D, Pusch, Maulik P, Shukla, Rick, Stevens, Veronika, Vonstein, Andrew, Warren, Fangfang, Xia, Hyunseung, Yoo
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1704
In the "big data" era, research biologists are faced with analyzing new types that usually require some level of computational expertise. A number of programs and pipelines exist, but acquiring the expertise to run them, and then understanding the ou
Autor:
Alice R. Wattam, Maulik Shukla, Chunhong Mao, Svetlana Gerdes, Fangfang Xia, Andrew S. Warren, James J. Davis, Hyunseung Yoo, Veronika Vonstein, Thomas Brettin, Rick Stevens, Dustin Machi, Ronald W. Kenyon, Gordon D. Pusch, Ross Overbeek, Robert Olson
Publikováno v:
Comparative Genomics ISBN: 9781493974610
In the "big data" era, research biologists are faced with analyzing new types that usually require some level of computational expertise. A number of programs and pipelines exist, but acquiring the expertise to run them, and then understanding the ou
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b799b60aa20311410bd576ba2bb254dd
https://doi.org/10.1007/978-1-4939-7463-4_4
https://doi.org/10.1007/978-1-4939-7463-4_4
Autor:
Chunhong Mao, Terry Disz, Ross Overbeek, Gary J. Olsen, Maulik Shukla, Joseph L. Gabbard, Robert Olson, Eric K. Nordberg, Rida Assaf, Dustin Machi, Christopher Bun, Rick Stevens, Hyunseung Yoo, Gordon D. Pusch, Thomas Brettin, Neal Conrad, Sébastien Boisvert, Veronika Vonstein, Svetlana Gerdes, Fangfang Xia, Christopher S. Henry, Daniel E. Murphy-Olson, Emily M. Dietrich, Bruce Parrello, Ronald W. Kenyon, Alice R. Wattam, Andrew S. Warren, James J. Davis
Publikováno v:
Nucleic Acids Research
The Pathosystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center (https://www.patricbrc.org). Recent changes to PATRIC include a redesign of the web interface and some new services that provide users with a platfo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2d105f63c39ac375acac5ba5c7cc12e1
https://hdl.handle.net/10919/88888
https://hdl.handle.net/10919/88888
Autor:
Veronika Vonstein, José P. Faria, Maulik Shukla, Ross Overbeek, Terrence Disz, Alice R. Wattam, Robert Olson, James J. Davis, Janaka N. Edirisinghe, Anna Hausmann, Gordon D. Pusch, Christopher S. Henry
Publikováno v:
3 Biotech
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
For many scientific applications, it is highly desirable to be able to compare metabolic models of closely related genomes. In this short report, we attempt to raise awareness to the fact that taking annotated genomes from public repositories and usi