RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics

Autor: Vera Thole, Jean-Etienne Bassard, Ricardo Ramírez-González, Martin Trick, Bijan Ghasemi Afshar, Dario Breitel, Lionel Hill, Alexandre Foito, Louise Shepherd, Sabine Freitag, Cláudia Nunes dos Santos, Regina Menezes, Pilar Bañados, Michael Naesby, Liangsheng Wang, Artem Sorokin, Olga Tikhonova, Tatiana Shelenga, Derek Stewart, Philippe Vain, Cathie Martin

Publikováno v: BMC Genomics, Vol 20, Iss 1, Pp 1-23 (2019)

Abstract Background Flavonoids are produced in all flowering plants in a wide range of tissues including in berry fruits. These compounds are of considerable interest for their biological activities, health benefits and potential pharmacological appl

Externí odkaz: https://doaj.org/article/44fe88644fc94685a83ae7ae8c09b38e

Effect of Elevated Temperature on Tomato Post-Harvest Properties

Autor: Philippe Vain, Cathie Martin, Vera Thole

Publikováno v: Plants
Volume 10
Issue 11
Plants, Vol 10, Iss 2359, p 2359 (2021)

The fleshy fruit of tomato (Solanum lycopersicum) is a commodity used worldwide as a fresh or processed product. Like many crops, tomato plants and harvested fruits are susceptible to the onset of climate change. Temperature plays a key role in tomat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ea2630a7a281160e2363b0513896d96

BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits

Autor: Shanshan Li, Mahdi Doostmohammadi, Markus Schmidt, Roberto Ferro, Camillo Meinhart, Morten H. H. Nørholm, Wei Wei, Marcel Ottens, Pilar Bañados, Ricardo Andrade, Mounir Benkoulouche, Derek Stewart, Martin Trick, Nuno Faria, Oscar P. Kuipers, Li-Jin Wang, Gonçalo Garcia, Marcelo Silva, Nicola Love, Ana Solopova, Wolfgang Kerbe, Björn Hamberger, David Méndez Sevillano, Laurent Bulteau, Armando M. Fernandes, Philippe Vain, Alice Julien-Laferriere, Liangsheng Wang, Harald Heider, Delphine Parrot, Cathie Martin, Joana Godinho-Pereira, Paula Gaspar, Barbara Avila, Michael Vogt, Dario Breitel, Jan Marienhagen, Ana Vila-Santa, Arnaud Mary, Artem Sorokin, Carolina Jardim, Jean-Etienne Bassard, Rex M. Brennan, Rafael S. Costa, Caroline Rousseau, Nicolai Kallscheuer, Louise V. T. Shepherd, Alexey Dudnik, A. Filipa Almeida, Vera Thole, Shang Su, Cheng-Yong Feng, André Veríssimo, Vincent Mazurek, Ana Rita Silva, Jochen Förster, Steen Gustav Stahlhut, Michael Naesby, András Hartmann, Alberto Marchetti-Spaccamela, Tatiana Shelenga, Céline Chanforan, Finn Thyge Okkels, Cláudia N. Santos, Olga Tikhonova, Alexandre Foito, Ana Rute Neves, Regina Menezes, Isabel Rocha, Inês Costa, Adelaide Braga, Olivier Simon, Rita Rosado-Ramos, Joana Oliveira, Michael Bott, Leen Stougie, Diane Barbay, Lei Pei, Sabine Freitag, Susana Vinga, Sandra Youssef, Patrícia Ferreira

Publikováno v: Repositório Científico de Acesso Aberto de Portugal
Repositório Científico de Acesso Aberto de Portugal (RCAAP)
instacron:RCAAP
Dudnik, A, Almeida, A F, Andrade, R, Avila, B, Bañados, P, Barbay, D, Bassard, J E, Benkoulouche, M, Bott, M, Braga, A, Breitel, D, Brennan, R, Bulteau, L, Chanforan, C, Costa, I, Costa, R S, Doostmohammadi, M, Faria, N, Feng, C, Fernandes, A, Ferreira, P, Ferro, R, Foito, A, Freitag, S, Garcia, G, Gaspar, P, Godinho-Pereira, J, Hamberger, B, Hartmann, A, Heider, H, Jardim, C, Julien-Laferriere, A, Kallscheuer, N, Kerbe, W, Kuipers, O P, Li, S, Love, N, Marchetti-Spaccamela, A, Marienhagen, J, Martin, C, Mary, A, Mazurek, V, Meinhart, C, Sevillano, D M, Menezes, R, Naesby, M, Nørholm, M H H, Okkels, F T, Oliveira, J, Ottens, M, Parrot, D, Pei, L, Rocha, I, Rosado-Ramos, R, Rousseau, C, Sagot, M F, Dos Santos, C N, Schmidt, M, Shelenga, T, Shepherd, L, Silva, A R, da Silva, M H, Simon, O, Stahlhut, S G, Solopova, A, Sorokin, A, Stewart, D, Stougie, L, Su, S, Thole, V, Tikhonova, O, Trick, M, Vain, P, Veríssimo, A, Vila-Santa, A, Vinga, S, Vogt, M, Wang, L, Wang, L, Wei, W, Youssef, S, Neves, A R & Forster, J 2018, ' BacHBerry:: BACterial Hosts for production of Bioactive phenolics from bERRY fruits ', Phytochemistry Reviews, vol. 17, no. 2, pp. 291-326 . https://doi.org/10.1007/s11101-017-9532-2
Phytochemistry Reviews, 17, 291-326
Dudnik, A, Almeida, A F, Andrade, R, Bañados, P, Barbay, D, Bassard, J-E, Benkoulouche, M, Bott, M, Braga, A, Breitel, D, Brennan, R, Bulteau, L, Chanforan, C, Costa, I, Costa, R S, Doostmohammadi, M, Faria, N, Feng, C, Fernandes, A, Ferreira, P, Ferro, R, Foito, A, Freitag, S, Garcia, G, Gaspar, P, Godinho-Pereira, J, Hamberger, B, Hartmann, A, Heider, H, Jardim, C, Julien-Laferriere, A, Kallscheuer, N, Kerbe, W, Kuipers, O P, Li, S, Love, N, Marchetti-Spaccamela, A, Marienhagen, J, Martin, C, Mary, A, Mazurek, V, Meinhart, C, Méndez Sevillano, D, Menezes, R, Naesby, M, Nørholm, M H H, Okkels, F T, Oliveira, J, Ottens, M, Parrot, D, Pei, L, Rocha, I, Rosado-Ramos, R, Rousseau, C, Sagot, M-F, Nunes dos Santos, C, Schmidt, M, Shelenga, T, Shepherd, L, Silva, A R, da Silva, M H, Simon, O, Stahlhut, S G, Solopova, A, Sorokin, A, Stewart, D, Stougie, L, Su, S, Thole, V, Tikhonova, O, Trick, M, Vain, P, Veríssimo, A, Vila-Santa, A, Vinga, S, Vogt, M, Wang, L, Wang, L, Wei, W, Youssef, S, Rute Neves, A & Forster, J 2018, ' BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits ', Phytochemistry Reviews, vol. 17, no. 2, pp. 291-326 . https://doi.org/10.1007/s11101-017-9532-2
Phytochemistry Reviews
Phytochemistry Reviews, 2017, pp.1-36. ⟨10.1007/s11101-017-9532-2⟩
Dudnik, A, Almeida, A F, Andrade, R, Avila, B, Bañados, P, Barbay, D, Bassard, J E, Benkoulouche, M, Bott, M, Braga, A, Breitel, D, Brennan, R, Bulteau, L, Chanforan, C, Costa, I, Costa, R S, Doostmohammadi, M, Faria, N, Feng, C, Fernandes, A, Ferreira, P, Ferro, R, Foito, A, Freitag, S, Garcia, G, Gaspar, P, Godinho-Pereira, J, Hamberger, B, Hartmann, A, Heider, H, Jardim, C, Julien-Laferriere, A, Kallscheuer, N, Kerbe, W, Kuipers, O P, Li, S, Love, N, Marchetti-Spaccamela, A, Marienhagen, J, Martin, C, Mary, A, Mazurek, V, Meinhart, C, Sevillano, D M, Menezes, R, Naesby, M, Nørholm, M H H, Okkels, F T, Oliveira, J, Ottens, M, Parrot, D, Pei, L, Rocha, I, Rosado-Ramos, R, Rousseau, C, Sagot, M F, dos Santos, C N, Schmidt, M, Shelenga, T, Shepherd, L, Silva, A R, da Silva, M H, Simon, O, Stahlhut, S G, Solopova, A, Sorokin, A, Stewart, D, Stougie, L, Su, S, Thole, V, Tikhonova, O, Trick, M, Vain, P, Veríssimo, A, Vila-Santa, A, Vinga, S, Vogt, M, Wang, L, Wang, L, Wei, W, Youssef, S, Neves, A R & Forster, J 2018, ' BacHBerry : BACterial Hosts for production of Bioactive phenolics from bERRY fruits ', Phytochemistry Reviews, vol. 17, no. 2, pp. 291-326 . https://doi.org/10.1007/s11101-017-9532-2
Phytochemistry Reviews, Springer Verlag, 2017, pp.1-36. ⟨10.1007/s11101-017-9532-2⟩

BACterial Hosts for production of Bioactive phenolics from bERRY fruits (BacHBerry) was a 3-year project funded by the Seventh Framework Programme (FP7) of the European Union that ran between November 2013 and October 2016. The overall aim of the pro

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dbec5ef8e68758eef7bbc9e69ce53dbd

Inducing chromosome pairing through premature condensation: analysis of wheat interspecific hybrids

Autor: Emma Greer, Graham Moore, Peter Shaw, S. M. Reader, Tracie Draeger, Vera Thole, Emilie Knight

Publikováno v: Functional & Integrative Genomics

At the onset of meiosis, chromosomes first decondense and then condense as the process of recognition and intimate pairing occurs between homologous chromosomes. We show here that okadaic acid, a drug known to induce chromosome condensation, can be i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7bda6f147d154f85fc7d20047dd5ed92
https://doi.org/10.1007/s10142-010-0185-0

A protocol for efficiently retrieving and characterizing flanking sequence tags (FSTs) in Brachypodium distachyon T-DNA insertional mutants

Autor: Philippe Vain, Sílvia C Alves, Barbara Worland, Michael W. Bevan, Vera Thole

Publikováno v: Nature Protocols. 4:650-661

Brachypodium distachyon is emerging as a new model system for bridging research into temperate cereal crops, such as wheat and barley, and for promoting research in novel biomass grasses. Here, we provide an adapter ligation PCR protocol that allows

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ae3ba005db71fe61d08d7d5486f1385
https://doi.org/10.1038/nprot.2009.32