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Additional File 5: Figure S4. Marker genes of all cell types at the mid-gastrula stage. All cells are shown clustered into their assigned cell types. The top 10 marker genes as ranked by Log2 fold-change are shown for each cell type unless used as a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab3f0575e7b2fc1244819916718c001a
Additional File 3: Figure S2. Adult of origin effect correction using SNPs. A-C) First-pass UMAP plots at the 64-cell (A), 112-cell (B), and mid-gastrula (C) stages where the animal lineages are colored in red. D-F) Dendrograms of heterarchical clust
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::21e6d26a478a0a00d924b2d746f1aaed
Additional File 8: Figure S7. The secondary notochord also exhibits transcriptional waves. A-B) Temporal expression profiles of all secondary notochord enriched genes (A), and transcription factors (B) reveal distinct waves of expression throughout t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6063c83b7e973fbaa7f54ed005c071fd
Additional File 6: Figure S5. Differences in transcriptional states vary by stage after U0126 treatment. A-B) UMAP projection of all DMSO and U0126 treated STAMPS at 64 cell stage (A) and 112 cell stage (B) colored by treatment. Dotted lines divide S
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d6bb3e925226066a1ad74f085768774
Additional File 1: Figure S1. Cell lineages and division patterns are stereotyped during early Ciona development. This figure summarizes the stereotyped cell lineages of early ascidian embryos based on the work of ([20–23, 43, 109, 110]). A-D’) A
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::347f0b304526623a21b69e032d5d2862
Additional File 9: Figure S8. TFBS enrichment in the primary notochord. Left panel) Average TFBS motif enrichment z-score in the primary and secondary notochord from the 64-cell, 112-cell, and mid-gastrula stages, which represent the early notochord
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1693ee5cadef917910dd9fbacf4159ce
Additional File 4: Figure S3. Marker genes of all cell types at the 64-cell stage. All cells are shown clustered into their assigned cell types. The top 10 marker genes as ranked by Log2 fold-change are shown for each cell type unless used as a marke
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b592e23e77cde51f39ab780049d2d01
Additional File 7: Figure S6. Poster image showing differential transcription factor expression and TFBS enrichment for all bifurcations.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d6485c89756c7b305b50fa6aaee8d84
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