Inference and applications of ancestral recombination graphs.

Autor: Nielsen R; Department of Integrative Biology and Department of Statistics, UC Berkeley, Berkeley, CA, USA. rasmus_nielsen@berkeley.edu.; GLOBE Institute, University of Copenhagen, Copenhagen, Denmark. rasmus_nielsen@berkeley.edu.; Center for Computational Biology, UC Berkeley, Berkeley, CA, USA. rasmus_nielsen@berkeley.edu., Vaughn AH; Center for Computational Biology, UC Berkeley, Berkeley, CA, USA., Deng Y; Center for Computational Biology, UC Berkeley, Berkeley, CA, USA.

Publikováno v: Nature reviews. Genetics [Nat Rev Genet] 2024 Sep 30. Date of Electronic Publication: 2024 Sep 30.

The selection landscape and genetic legacy of ancient Eurasians.

Autor: Irving-Pease EK; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark. evan.irvingpease@gmail.com., Refoyo-Martínez A; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Barrie W; GeoGenetics Group, Department of Zoology, University of Cambridge, Cambridge, UK., Ingason A; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Institute of Biological Psychiatry, Mental Health Services, Copenhagen University Hospital, Roskilde, Denmark., Pearson A; Department of Genetics, University of Cambridge, Cambridge, UK.; Department of Zoology, University of Cambridge, Cambridge, UK., Fischer A; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Department of Historical Studies, University of Gothenburg, Gothenburg, Sweden.; Sealand Archaeology, Kalundborg, Denmark., Sjögren KG; Department of Historical Studies, University of Gothenburg, Gothenburg, Sweden., Halgren AS; Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA., Macleod R; GeoGenetics Group, Department of Zoology, University of Cambridge, Cambridge, UK.; UCL Genetics Institute, University College London, London, UK., Demeter F; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Eco-anthropologie, Muséum national d'Histoire naturelle, CNRS, Université Paris Cité, Musée de l'Homme, Paris, France., Henriksen RA; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Vimala T; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., McColl H; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Vaughn AH; Center for Computational Biology, University of California, Berkeley, CA, USA., Speidel L; UCL Genetics Institute, University College London, London, UK.; Ancient Genomics Laboratory, The Francis Crick Institute, London, UK., Stern AJ; Center for Computational Biology, University of California, Berkeley, CA, USA., Scorrano G; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Ramsøe A; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Schork AJ; Institute of Biological Psychiatry, Mental Health Services, Copenhagen University Hospital, Roskilde, Denmark.; Neurogenomics Division, The Translational Genomics Research Institute (TGEN), Phoenix, AZ, USA., Rosengren A; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Institute of Biological Psychiatry, Mental Health Services, Copenhagen University Hospital, Roskilde, Denmark., Zhao L; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Kristiansen K; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Department of Historical Studies, University of Gothenburg, Gothenburg, Sweden., Iversen AKN; Oxford Centre for Neuroinflammation, Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, University of Oxford, Oxford, UK.; Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, University of Oxford, Oxford, UK., Fugger L; Oxford Centre for Neuroinflammation, Nuffield Department of Clinical Neurosciences, John Radcliffe Hospital, University of Oxford, Oxford, UK.; Department of Clinical Medicine, Aarhus University Hospital, Aarhus, Denmark.; MRC Human Immunology Unit, John Radcliffe Hospital, University of Oxford, Oxford, UK., Sudmant PH; Department of Integrative Biology, University of California Berkeley, Berkeley, CA, USA.; Center for Computational Biology, University of California, Berkeley, CA, USA., Lawson DJ; Institute of Statistical Sciences, School of Mathematics, University of Bristol, Bristol, UK., Durbin R; Department of Genetics, University of Cambridge, Cambridge, UK.; Wellcome Sanger Institute, Cambridge, UK., Korneliussen T; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Werge T; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Department of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark.; Institute of Biological Psychiatry, Mental Health Center Sct Hans, Copenhagen University Hospital, Copenhagen, Denmark., Allentoft ME; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark.; Trace and Environmental DNA (TrEnD) Laboratory, School of Molecular and Life Science, Curtin University, Perth, Western Australia, Australia., Sikora M; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark., Nielsen R; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark. rasmus_nielsen@berkeley.edu.; Departments of Integrative Biology and Statistics, UC Berkeley, Berkeley, CA, USA. rasmus_nielsen@berkeley.edu., Racimo F; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark. fracimo@sund.ku.dk., Willerslev E; Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Copenhagen, Denmark. ew482@cam.ac.uk.; GeoGenetics Group, Department of Zoology, University of Cambridge, Cambridge, UK. ew482@cam.ac.uk.; MARUM Center for Marine Environmental Sciences and Faculty of Geosciences, University of Bremen, Bremen, Germany. ew482@cam.ac.uk.

Publikováno v: Nature [Nature] 2024 Jan; Vol. 625 (7994), pp. 312-320. Date of Electronic Publication: 2024 Jan 10.

Evaluation of methods for estimating coalescence times using ancestral recombination graphs.

Autor: Y C Brandt D; Department of Integrative Biology, University of California Berkeley, Berkeley, CA 94720, USA., Wei X; Department of Computational Biology, Cornell University, Ithaca, NY 14850, USA., Deng Y; Center for Computational Biology, University of California, Berkeley, CA 94720, USA., Vaughn AH; Center for Computational Biology, University of California, Berkeley, CA 94720, USA., Nielsen R; Department of Integrative Biology, University of California Berkeley, Berkeley, CA 94720, USA.; Center for Computational Biology, University of California, Berkeley, CA 94720, USA.; Department of Statistics, University of California Berkeley, Berkeley, CA 94720, USA.; GLOBE Institute, University of Copenhagen, Copenhagen K 1350, Denmark.

Publikováno v: Genetics [Genetics] 2022 May 05; Vol. 221 (1).

Maximum Likelihood Estimation of Fitness Components in Experimental Evolution.

Autor: Liu J; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Champer J; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853 jc3248@cornell.edu messer@cornell.edu.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Langmüller AM; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Institut für Populationsgenetik, Vetmeduni Vienna, 1210, Austria.; Vienna Graduate School of Population Genetics, 1210, Austria., Liu C; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Chung J; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Reeves R; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Luthra A; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Lee YL; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Vaughn AH; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853., Clark AG; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853., Messer PW; Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, New York 14853 jc3248@cornell.edu messer@cornell.edu.

Publikováno v: Genetics [Genetics] 2019 Mar; Vol. 211 (3), pp. 1005-1017. Date of Electronic Publication: 2019 Jan 24.