Genes controlling hydrolysate toxin tolerance identified by QTL analysis of the natural Saccharomyces cerevisiae BCC39850.

Autor: Sornlek W; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand.; The Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands., Sonthirod C; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand., Tangphatsornruang S; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand., Ingsriswang S; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand., Runguphan W; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand., Eurwilaichtr L; National Energy Technology Center, 114 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand., Champreda V; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand., Tanapongpipat S; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, 12120, Pathum Thani, Thailand. sutipa@biotec.or.th., Schaap PJ; The Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands., Martins Dos Santos VAP; The Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, 6708 WE, Wageningen, The Netherlands. vitor.martinsdossantos@wur.nl.; Bioprocess Engineering Group, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands. vitor.martinsdossantos@wur.nl.; LifeGlimmer GmbH, Markelstrasse 38, 12163, Berlin, Germany. vitor.martinsdossantos@wur.nl.

Publikováno v: Applied microbiology and biotechnology [Appl Microbiol Biotechnol] 2024 Dec; Vol. 108 (1), pp. 21. Date of Electronic Publication: 2023 Dec 30.

Making PBPK models more reproducible in practice.

Autor: Domínguez-Romero E; Department of Bioinformatics-BiGCaT, School of Nutrition and Translational Research in Metabolism, Faculty of Health, Medicine and Life Sciences, Maastricht University, P.O. Box 616, 6200 MD, Maastricht, The Netherlands.; RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, 611 37, Brno, Czech Republic., Mazurenko S; Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic.; International Clinical Research Center, St. Anne's University Hospital Brno, Pekařská 53, 656 91, Brno, Czech Republic., Scheringer M; RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, 611 37, Brno, Czech Republic., Martins Dos Santos VAP; Laboratory of Bioprocess Engineering, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands., Evelo CT; Department of Bioinformatics-BiGCaT, School of Nutrition and Translational Research in Metabolism, Faculty of Health, Medicine and Life Sciences, Maastricht University, P.O. Box 616, 6200 MD, Maastricht, The Netherlands., Anton M; ELIXIR, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom.; Department of Life Sciences, National Bioinformatics Infrastructure Sweden (NBIS), SciLifeLab, Chalmers University of Technology, Kemigården 1, Gothenburg SE-412 96, Sweden., Hancock JM; Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška 4, 1000 Ljubljana, Slovenia., Županič A; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 121, 1000 Ljubljana, Slovenia., Suarez-Diez M; Laboratory of Systems and Synthetic Biology (SSB), Wageningen University and Research, Agrotechnology and Food Sciences, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

Publikováno v: Briefings in bioinformatics [Brief Bioinform] 2024 Sep 23; Vol. 25 (6).

Integrative protocol for quantifying cholesterol-related sterols in human serum samples and building decision support systems.

Autor: Kočar E; Centre for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Katz S; Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, 6708 WE Wageningen, the Netherlands; LifeGlimmer GmbH, Markelstraße 38, 12163 Berlin, Germany., Pušnik Ž; Faculty of Computer and Information Science, University of Ljubljana, Večna pot 113, 1000 Ljubljana, Slovenia., Skubic C; Centre for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Režen T; Centre for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia., Martins Dos Santos VAP; LifeGlimmer GmbH, Markelstraße 38, 12163 Berlin, Germany; Laboratory of Bioprocess Engineering, Wageningen University and Research, Droevendaalsesteeg 1, 6708 PB Wageningen, the Netherlands., Mraz M; Faculty of Computer and Information Science, University of Ljubljana, Večna pot 113, 1000 Ljubljana, Slovenia., Moškon M; Faculty of Computer and Information Science, University of Ljubljana, Večna pot 113, 1000 Ljubljana, Slovenia. Electronic address: miha.moskon@fri.uni-lj.si., Rozman D; Centre for Functional Genomics and Bio-Chips, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Zaloška cesta 4, 1000 Ljubljana, Slovenia. Electronic address: damjana.rozman@mf.uni-lj.si.

Publikováno v: STAR protocols [STAR Protoc] 2024 Sep 20; Vol. 5 (3), pp. 103213. Date of Electronic Publication: 2024 Jul 31.

Identification of genes associated with the high-temperature fermentation trait in the Saccharomyces cerevisiae natural isolate BCC39850.

Autor: Sornlek W; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand.; The Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, Wageningen, 6708 WE, the Netherlands., Suwanakitti N; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Sonthirod C; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Tangphatsornruang S; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Ingsriswang S; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Runguphan W; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Eurwilaichtr L; National Energy Technology Center, 114 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Tanapongpipat S; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Champreda V; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand., Roongsawang N; National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Phahonyothin Road, Khlong Nueng, Khlong Luang, Pathum Thani, 12120, Thailand. niran.roo@biotec.or.th., Schaap PJ; The Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, Wageningen, 6708 WE, the Netherlands., Martins Dos Santos VAP; The Laboratory of Systems and Synthetic Biology, Wageningen University and Research, Stippeneng 4, Wageningen, 6708 WE, the Netherlands. vitor.martinsdossantos@wur.nl.; Bioprocess Engineering Group, Wageningen University and Research, Droevendaalsesteeg 1, Wageningen, 6708 PB, the Netherlands. vitor.martinsdossantos@wur.nl.; LifeGlimmer GmbH, Markelstrasse 38, 12163, Berlin, Germany. vitor.martinsdossantos@wur.nl.

Publikováno v: Archives of microbiology [Arch Microbiol] 2024 Sep 04; Vol. 206 (10), pp. 391. Date of Electronic Publication: 2024 Sep 04.

Pseudomonas putida as a platform for medium-chain length α,ω-diol production: Opportunities and challenges.

Autor: Lu C; Bioprocess Engineering, Wageningen University & Research, Wageningen, The Netherlands.; Groningen Biomolecular Sciences & Biotechnology Institute, University of Groningen, Groningen, The Netherlands., Wijffels RH; Bioprocess Engineering, Wageningen University & Research, Wageningen, The Netherlands.; Faculty of Biosciences and Aquaculture, Nord University, Bodø, Norway., Martins Dos Santos VAP; Bioprocess Engineering, Wageningen University & Research, Wageningen, The Netherlands.; Lifeglimmer GmbH, Berlin, Germany., Weusthuis RA; Bioprocess Engineering, Wageningen University & Research, Wageningen, The Netherlands.

Publikováno v: Microbial biotechnology [Microb Biotechnol] 2024 Mar; Vol. 17 (3), pp. e14423.