Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Autor: Olson, Robert D, Assaf, Rida, Brettin, Thomas, Conrad, Neal, Cucinell, Clark, Davis, James J, Dempsey, Donald M, Dickerman, Allan, Dietrich, Emily M, Kenyon, Ronald W, Kuscuoglu, Mehmet, Lefkowitz, Elliot J, Lu, Jian, Machi, Dustin, Macken, Catherine, Mao, Chunhong, Niewiadomska, Anna, Nguyen, Marcus, Olsen, Gary J, Overbeek, Jamie C, Parrello, Bruce, Parrello, Victoria, Porter, Jacob S, Pusch, Gordon D, Shukla, Maulik, Singh, Indresh, Stewart, Lucy, Tan, Gene, Thomas, Chris, VanOeffelen, Margo, Vonstein, Veronika, Wallace, Zachary S, Warren, Andrew S, Wattam, Alice R, Xia, Fangfang, Yoo, Hyunseung, Zhang, Yun, Zmasek, Christian M, Scheuermann, Richard H, Stevens, Rick L

Publikováno v: Nucleic acids research, vol 51, iss D1

The National Institute of Allergy and Infectious Diseases (NIAID) established the Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the growing body of genome sequence and other omics-related data. In this report, we d

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::89eaf6445b58a59c9fe366c9458a32d6
https://escholarship.org/uc/item/0tp0p6vj

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.

Autor: Olson RD; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Assaf R; Department of Computer Science, American University of Beirut, Beirut, Lebanon., Brettin T; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA., Conrad N; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Cucinell C; University of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA., Davis JJ; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Dempsey DM; Department of Microbiology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA., Dickerman A; University of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA., Dietrich EM; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Kenyon RW; University of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA., Kuscuoglu M; Department of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA., Lefkowitz EJ; Department of Microbiology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA., Lu J; J. Craig Venter Institute, Rockville, MD 20850, USA., Machi D; University of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA., Macken C; Department of Statistics, University of Auckland, Auckland, New Zealand., Mao C; University of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA., Niewiadomska A; Department of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA., Nguyen M; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Olsen GJ; Department of Microbiology, University of Illinois, Urbana, IL 61801, USA., Overbeek JC; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Parrello B; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Parrello V; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Porter JS; Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA., Pusch GD; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Shukla M; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Singh I; J. Craig Venter Institute, Rockville, MD 20850, USA., Stewart L; Department of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA., Tan G; Department of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA., Thomas C; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., VanOeffelen M; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Vonstein V; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Wallace ZS; Department of Microbiology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.; Department of Computer Science and Engineering, University of California, San Diego, CA 92039, USA., Warren AS; University of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA., Wattam AR; University of Virginia Biocomplexity Institute, Charlottesville, VA 22904, USA., Xia F; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Yoo H; Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Zhang Y; Department of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA., Zmasek CM; Department of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA., Scheuermann RH; Department of Informatics, J. Craig Venter Institute, La Jolla, CA 92037, USA.; Department of Pathology, University of California, San Diego, CA 92093, USA.; Division of Vaccine Discovery, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.; Global Virus Network, Baltimore, MD 21201, USA., Stevens RL; Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA.; Department of Computer Science, University of Chicago, Chicago, IL 60637, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D678-D689.

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.

Autor: Davis JJ; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Wattam AR; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA.; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA., Aziz RK; Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo University, 11562 Cairo, Egypt.; Center for Genome and Microbiome Research, Cairo University, 11562 Cairo, Egypt., Brettin T; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA., Butler R; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA.; Middle Tennessee State University, Murfreesboro, TN 37132, USA., Butler RM; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Chlenski P; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Conrad N; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Dickerman A; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA., Dietrich EM; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA., Gabbard JL; Virginia Tech, Blacksburg, VA 24061, USA., Gerdes S; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Guard A; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA., Kenyon RW; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA., Machi D; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA., Mao C; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA., Murphy-Olson D; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA., Nguyen M; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Nordberg EK; Transportation Institute, Virginia Tech University, Blacksburg, VA 24061, USA., Olsen GJ; Department of Microbiology, University of Illinois, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois, Urbana, IL 61801, USA., Olson RD; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Overbeek JC; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Overbeek R; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA., Parrello B; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Pusch GD; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Shukla M; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Thomas C; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA., VanOeffelen M; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Vonstein V; Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA., Warren AS; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA., Xia F; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Xie D; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904, USA., Yoo H; University of Chicago Consortium for Advanced Science and Engineering, University of Chicago, Chicago, IL 60637, USA.; Division of Data Science and Learning, Argonne National Laboratory, Argonne, IL 60439, USA., Stevens R; Computing Environment and Life Sciences, Argonne National Laboratory, Argonne, IL 60439, USA.; University of Chicago, Department of Computer Science, Chicago, IL 60637, USA.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D606-D612.