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Large-scale analysis of sheep rumen metagenome profiles captured by reduced representation sequencing reveals individual profiles are influenced by the environment and genetics of the host.

Autor: Hess MK; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand. melanie.k.hess@gmail.com., Hodgkinson HE; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., Hess AS; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.; Agriculture, Veterinary & Rangeland Sciences, University of Nevada-Reno, 1664 N. Virginia St. Mail stop 202, Reno, NV, 89557, USA., Zetouni L; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.; Wageningen University & Research, P.O. Box 338, 6700, AH, Wageningen, The Netherlands., Budel JCC; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.; Graduate Program in Animal Science, Universidade Federal do Pará (UFPa), Castanhal, Brazil., Henry H; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., Donaldson A; NSW Department of Primary Industries, University of New England, Armidale, 2351, Australia., Bilton TP; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., van Stijn TC; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., Kirk MR; AgResearch Ltd., Grasslands Research Centre, Private Bag 11,008, Palmerston North, 4410, New Zealand., Dodds KG; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., Brauning R; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., McCulloch AF; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., Hickey SM; AgResearch Ltd., Ruakura Research Centre, Private Bag 3115, Hamilton, 3214, New Zealand., Johnson PL; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., Jonker A; AgResearch Ltd., Grasslands Research Centre, Private Bag 11,008, Palmerston North, 4410, New Zealand., Morton N; Te Pūnaha Matatini, University of Auckland, Auckland, 1010, New Zealand., Hendy S; Te Pūnaha Matatini, University of Auckland, Auckland, 1010, New Zealand., Oddy VH; NSW Department of Primary Industries, University of New England, Armidale, 2351, Australia., Janssen PH; AgResearch Ltd., Grasslands Research Centre, Private Bag 11,008, Palmerston North, 4410, New Zealand., McEwan JC; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand., Rowe SJ; AgResearch Ltd., Invermay Agricultural Centre, Private Bag 50034, Mosgiel, 9053, New Zealand.

Publikováno v: BMC genomics [BMC Genomics] 2023 Sep 18; Vol. 24 (1), pp. 551. Date of Electronic Publication: 2023 Sep 18.

A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling.

Autor: Hess MK; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., Rowe SJ; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., Van Stijn TC; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., Henry HM; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., Hickey SM; AgResearch Limited, Ruakura Agricultural Centre, Hamilton, New Zealand., Brauning R; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., McCulloch AF; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., Hess AS; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., Kirk MR; AgResearch Limited, Grasslands Research Centre, Palmerston North, New Zealand., Kumar S; AgResearch Limited, Grasslands Research Centre, Palmerston North, New Zealand., Pinares-Patiño C; AgResearch Limited, Grasslands Research Centre, Palmerston North, New Zealand., Kittelmann S; AgResearch Limited, Grasslands Research Centre, Palmerston North, New Zealand., Wood GR; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand., Janssen PH; AgResearch Limited, Grasslands Research Centre, Palmerston North, New Zealand., McEwan JC; AgResearch Limited, Invermay Agricultural Centre, Mosgiel, New Zealand.

Publikováno v: PloS one [PLoS One] 2020 Apr 03; Vol. 15 (4), pp. e0219882. Date of Electronic Publication: 2020 Apr 03 (Print Publication: 2020).

Protocol: a versatile, inexpensive, high-throughput plant genomic DNA extraction method suitable for genotyping-by-sequencing.

Autor: Anderson CB; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand., Franzmayr BK; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand.; Present Address: Slipstream Automation, Bachelor Centre, Module 4, Tennent Drive, Palmerston North, 4442 New Zealand., Hong SW; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand., Larking AC; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand., van Stijn TC; 3AgResearch Invermay Agricultural Centre, Puddle Alley, Private Bag 50034, Mosgiel, 9053 New Zealand., Tan R; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand., Moraga R; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand., Faville MJ; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand., Griffiths AG; 1AgResearch Grasslands Research Centre, Private Bag 11008, Palmerston North, 4442 New Zealand.

Publikováno v: Plant methods [Plant Methods] 2018 Aug 28; Vol. 14, pp. 75. Date of Electronic Publication: 2018 Aug 28 (Print Publication: 2018).