Differential rates of Mycobacterium tuberculosis transmission associate with host-pathogen sympatry.

Autor: Gröschel MI; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. matthias_groeschel@hms.harvard.edu.; Department of Infectious Diseases and Respiratory Medicine, Charité-Universitätsmedizin Berlin, Berlin, Germany. matthias_groeschel@hms.harvard.edu.; Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin, Germany. matthias_groeschel@hms.harvard.edu., Pérez-Llanos FJ; Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany.; West German Genome Center, Heinrich Heine University Düsseldorf, Düsseldorf, Germany.; Institute of Human Genetics, The University Hospital of Düsseldorf, Düsseldorf, Germany., Diel R; Institute for Epidemiology, University Medical Hospital Schleswig-Holstein, Kiel, Germany.; Lungenclinic Grosshansdorf, Airway Research Center North (ARCN), Member of the German Center for Lung Research (DZL), Grosshansdorf, Germany., Vargas R Jr; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA., Escuyer V; Wadsworth Center, New York State Department of Health, Albany, NY, USA., Musser K; Wadsworth Center, New York State Department of Health, Albany, NY, USA., Trieu L; New York City Department of Health and Mental Hygiene, New York, NY, USA., Meissner JS; New York City Department of Health and Mental Hygiene, New York, NY, USA., Knorr J; New York City Department of Health and Mental Hygiene, New York, NY, USA., Klinkenberg D; Center for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands., Kouw P; Department of Tuberculosis, Public Health Service, Amsterdam, The Netherlands., Homolka S; Diagnostic Mycobacteriology, National and Supranational Reference Center for Mycobacteria, Research Center Borstel, Borstel, Germany., Samek W; Department of Electrical Engineering and Computer Science, Technical University Berlin, Berlin, Germany.; Department of Artificial Intelligence, Fraunhofer Heinrich Hertz Institute, Berlin, Germany., Mathema B; Mailman School of Public Health, Columbia University, New York City, NY, USA., van Soolingen D; Center for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands., Niemann S; Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany.; German Center for Infection Research, Partner Site Hamburg-Lübeck-Borstel-Riems, Borstel, Germany., Ahuja SD; New York City Department of Health and Mental Hygiene, New York, NY, USA., Farhat MR; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. maha_farhat@hms.harvard.edu.; Division of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, Boston, MA, USA. maha_farhat@hms.harvard.edu.

Publikováno v: Nature microbiology [Nat Microbiol] 2024 Aug; Vol. 9 (8), pp. 2113-2127. Date of Electronic Publication: 2024 Aug 01.

Mycobacterium tuberculosis complex sample processing by mechanical lysis, an essential step for reliable whole genome sequencing.

Autor: Hermans N; Diagnostics Team, Division of TB Elimination & Health Systems Innovations, KNCV Tuberculosis Foundation, 2516 AB The Hague, the Netherlands; Department Bacterial Surveillance and Response, Center for Infectious Disease Control, Diagnostics and Laboratory Surveillance, National Institute for Public Health and the Environment (RIVM), 3721 MA Bilthoven, the Netherlands., de Zwaan R; Department Bacterial Surveillance and Response, Center for Infectious Disease Control, Diagnostics and Laboratory Surveillance, National Institute for Public Health and the Environment (RIVM), 3721 MA Bilthoven, the Netherlands., Mulder A; Department Bacterial Surveillance and Response, Center for Infectious Disease Control, Diagnostics and Laboratory Surveillance, National Institute for Public Health and the Environment (RIVM), 3721 MA Bilthoven, the Netherlands., van den Dool J; Department Bacterial Surveillance and Response, Center for Infectious Disease Control, Diagnostics and Laboratory Surveillance, National Institute for Public Health and the Environment (RIVM), 3721 MA Bilthoven, the Netherlands., van Soolingen D; Department Bacterial Surveillance and Response, Center for Infectious Disease Control, Diagnostics and Laboratory Surveillance, National Institute for Public Health and the Environment (RIVM), 3721 MA Bilthoven, the Netherlands., Kremer K; Diagnostics Team, Division of TB Elimination & Health Systems Innovations, KNCV Tuberculosis Foundation, 2516 AB The Hague, the Netherlands., Anthony R; Department Bacterial Surveillance and Response, Center for Infectious Disease Control, Diagnostics and Laboratory Surveillance, National Institute for Public Health and the Environment (RIVM), 3721 MA Bilthoven, the Netherlands. Electronic address: richard.anthony@rivm.nl.

Publikováno v: Journal of microbiological methods [J Microbiol Methods] 2024 Oct 10; Vol. 227, pp. 107053. Date of Electronic Publication: 2024 Oct 10.

Phylogenomic and genomic analysis reveals unique and shared genetic signatures of Mycobacterium kansasii complex species.

Autor: Machado E; Laboratório de Biologia Molecular Aplicada a Micobactérias, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brazil., Vasconcellos S; Laboratório de Biologia Molecular Aplicada a Micobactérias, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brazil., Gomes L; Laboratório de Biologia Molecular Aplicada a Micobactérias, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brazil., Catanho M; Laboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brazil., Ramos J; Laboratório de Referência Nacional para Tuberculose, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, Rio de Janeiro, RJ, Brazil., de Carvalho L; Laboratório de Referência Nacional para Tuberculose, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, Rio de Janeiro, RJ, Brazil., Goldenberg T; Laboratório de Referência Nacional para Tuberculose, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, Rio de Janeiro, RJ, Brazil., Redner P; Laboratório de Referência Nacional para Tuberculose, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, Rio de Janeiro, RJ, Brazil., Caldas P; Laboratório de Referência Nacional para Tuberculose, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, Rio de Janeiro, RJ, Brazil., Campos C; Laboratório de Referência Nacional para Tuberculose, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, Rio de Janeiro, RJ, Brazil., Dalcolmo M; Serviço de Pesquisa Clínica, Centro de Referência Professor Hélio Fraga, Escola Nacional de Saúde Pública, Fiocruz, Rio de Janeiro, RJ, Brazil., Lourenço MC; Laboratório de Bacteriologia e Bioensaios, Instituto Nacional de Infectologia, Fiocruz, Rio de Janeiro, RJ, Brazil., Lasunskaia E; Laboratório de Biologia do Reconhecer, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, RJ, Brazil., Mussi V; Laboratório de Biologia do Reconhecer, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Campos dos Goytacazes, RJ, Brazil., Spinassé L; Núcleo de Doenças Infecciosas, Universidade Federal do Espírito Santo, Vitória, ES, Brazil., Vinhas S; Núcleo de Doenças Infecciosas, Universidade Federal do Espírito Santo, Vitória, ES, Brazil., Rigouts L; Unit of Mycobacteriology, Institute of Tropical Medicine, Antwerp, Belgium., Cogneau S; Unit of Mycobacteriology, Institute of Tropical Medicine, Antwerp, Belgium., de Rijk P; Unit of Mycobacteriology, Institute of Tropical Medicine, Antwerp, Belgium., Utpatel C; German Center for Infection Research, Partner Site Hamburg-Lübeck-Borstel-Riems, Borstel, Germany.; Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany., Kaustova J; Department of Diagnostic Mycobacterioses, Regional Institute of Public Health, Ostrava, Czech Republic., van der Laan T; National Institute for Public Health and the Environment, Bilthoven, Netherlands., de Neeling H; National Institute for Public Health and the Environment, Bilthoven, Netherlands., Rastogi N; TB and Mycobacteria Unit, Institut Pasteur de Guadeloupe, Guadeloupe, France., Levina K; Mycobacteriology Section of Microbiology Laboratory, North Estonia Medical Centre, Tallinn, Estonia., Kütt M; Mycobacteriology Section of Microbiology Laboratory, North Estonia Medical Centre, Tallinn, Estonia., Mokrousov I; Laboratory of Molecular Epidemiology and Evolutionary Genetics, St. Petersburg Pasteur Institute, St. Petersburg, Russia., Zhuravlev V; St. Petersburg Research Institute of Phthisiopulmonology, St. Petersburg, Russia., Makhado N; Department of Microbiological Pathology, Sefako Makgatho Health Sciences University, Pretoria, South Africa.; National Health Laboratory Service, Dr George Mukhari Tertiary Laboratory, Medical Microbiology, Pretoria, South Africa.; Global Institute of Health, University of Antwerp, Antwerp, Belgium.; Unit of Mycobacteriology, Institute of Tropical Medicine, Antwerp, Belgium., Žolnir-Dovč M; National Reference Laboratory for Mycobacteria, University Clinic of Respiratory and Allergic Diseases, Golnik, Slovenia., Jankovic V; Mycobacteria Reference Laboratory, Croatian National Institute of Public Health, Zagreb, Croatia., de Waard J; Tuberculosis Department. Servicio Autónomo Instituto de Biomedicina Dr. Jacinto Convit, Universidad Central de Venezuela, Caracas, Venezuela.; One Health Research Group, Universidad de Las Américas, Quito, Ecuador., Sisco MC; Tuberculosis Department. Servicio Autónomo Instituto de Biomedicina Dr. Jacinto Convit, Universidad Central de Venezuela, Caracas, Venezuela., van Soolingen D; National Institute for Public Health and the Environment, Bilthoven, Netherlands., Niemann S; German Center for Infection Research, Partner Site Hamburg-Lübeck-Borstel-Riems, Borstel, Germany.; Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany., de Jong BC; Unit of Mycobacteriology, Institute of Tropical Medicine, Antwerp, Belgium., Meehan CJ; Department of Biosciences, Nottingham Trent University, Nottingham, UK.; Unit of Mycobacteriology, Institute of Tropical Medicine, Antwerp, Belgium., Suffys P; Laboratório de Biologia Molecular Aplicada a Micobactérias, Instituto Oswaldo Cruz, Fiocruz, Rio de Janeiro, RJ, Brazil.

Publikováno v: Microbial genomics [Microb Genom] 2024 Jul; Vol. 10 (7).

The Effect of Age and Study Duration on the Relationship between 'Clustering' of DNA Fingerprint Patterns and the Proportion of Tuberculosis Disease Attributable to Recent Transmission

Autor: Vynnycky, E., Nagelkerke, N., Borgdorff, M. W., Van Soolingen, D., Van Embden, J. D. A., Fine, P. E. M.

Publikováno v: Epidemiology and Infection, 2001 Feb 01. 126(1), 43-62.

Externí odkaz: https://www.jstor.org/stable/3864766

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

Autor: Meehan, Conor J., Goig, G.A., Kohl, T.A., Verboven, L., Dippenaar, A., Ezewudo, M., Farhat, M.R., Guthrie, J.L., Laukens, K., Miotto, P., Ofori-Anyinam, B., Dreyer, V., Supply, P., Suresh, A., Utpatel, C., van Soolingen, D., Zhou, Y., Ashton, P.M., Brites, D., Cabibbe, A.M., de Jong, B.C., de Vos, M., Menardo, F., Gagneux, S., Gao, Q., Heupink, T.H., Liu, Q., Loiseau, C., Rigouts, L., Rodwell, T.C., Tagliani, E., Walker, T.M., Warren, R.M., Zhao, Y., Zignol, M., Schito, M., Gardy, J., Cirillo, D.M., Niemann, S., Comas, I., Van Rie, A.

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has rapidly progressed from a research tool to a clinical application for the diagnosis and management of tuberculosis and in public health surveillance. This development has been facilitate

Externí odkaz: http://hdl.handle.net/10454/17276