Environmental stress mediates groundwater microbial community assembly.

Autor: Ning D; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; School of Biological Sciences, University of Oklahoma, Norman, OK, USA., Wang Y; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; School of Biological Sciences, University of Oklahoma, Norman, OK, USA., Fan Y; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; School of Biological Sciences, University of Oklahoma, Norman, OK, USA., Wang J; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China., Van Nostrand JD; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA., Wu L; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; School of Biological Sciences, University of Oklahoma, Norman, OK, USA., Zhang P; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; Alkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, TX, USA., Curtis DJ; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA., Tian R; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; Institute for Food Safety and Health, Illinois Institute of Technology, Bedford Park, IL, USA., Lui L; Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Hazen TC; Department of Earth and Planetary Sciences, Bredesen Center, Department of Civil and Environmental Sciences, Center for Environmental Biotechnology, and Institute for a Secure and Sustainable Environment, University of Tennessee, Knoxville, TN, USA.; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.; Department of Bioengineering, University of California, Berkeley, CA, USA., Alm EJ; Department of Biological Engineering, Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA., Fields MW; Center for Biofilm Engineering and Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, USA., Poole F; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA., Adams MWW; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA, USA., Chakraborty R; Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Stahl DA; Department of Civil and Environmental Engineering, University of Washington, Seattle, WA, USA., Adams PD; Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Bioengineering, University of California, Berkeley, CA, USA., Arkin AP; Division of Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Bioengineering, University of California, Berkeley, CA, USA., He Z; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.; Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China., Zhou J; Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA. jzhou@ou.edu.; School of Biological Sciences, University of Oklahoma, Norman, OK, USA. jzhou@ou.edu.; Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. jzhou@ou.edu.; School of Civil Engineering and Environmental Sciences, University of Oklahoma, Norman, OK, USA. jzhou@ou.edu.; School of Computer Science, University of Oklahoma, Norman, OK, USA. jzhou@ou.edu.

Publikováno v: Nature microbiology [Nat Microbiol] 2024 Feb; Vol. 9 (2), pp. 490-501. Date of Electronic Publication: 2024 Jan 11.

Ecophysiological and genomic analyses of a representative isolate of highly abundant Bacillus cereus strains in contaminated subsurface sediments.

Autor: Goff JL; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA., Szink EG; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA., Thorgersen MP; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA., Putt AD; Earth and Planetary Sciences, University of Tennessee, Knoxville, Tennessee, USA., Fan Y; Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA., Lui LM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Nielsen TN; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Hunt KA; Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA., Michael JP; Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA., Wang Y; Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA., Ning D; Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA., Fu Y; Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA., Van Nostrand JD; Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA., Poole FL 2nd; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA., Chandonia JM; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Hazen TC; Earth and Planetary Sciences, University of Tennessee, Knoxville, Tennessee, USA.; Genome Sciences Division, Oak Ridge National Lab, Oak Ridge, Tennessee, USA.; Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, USA., Stahl DA; Civil and Environmental Engineering, University of Washington, Seattle, Washington, USA., Zhou J; Institute for Environmental Genomics, University of Oklahoma, Norman, Oklahoma, USA.; Department of Microbiology and Plant Biology, University of Oklahoma, Norman, Oklahoma, USA.; School of Civil Engineering and Environmental Sciences, University of Oklahoma, Norman, Oklahoma, USA.; Earth and Environmental Sciences, Lawrence Berkley National Laboratory, Berkeley, California, USA., Arkin AP; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.; Department of Bioengineering, University of California at Berkeley, Berkeley, California, USA., Adams MWW; Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia, USA.

Publikováno v: Environmental microbiology [Environ Microbiol] 2022 Nov; Vol. 24 (11), pp. 5546-5560. Date of Electronic Publication: 2022 Sep 01.

Divergent responses of forest soil microbial communities under elevated CO2in different depths of upper soil layers

Autor: Yu, H, He, Z, Wang, A, Xie, J, Wu, L, Van Nostrand, JD, Jin, D, Shao, Z, Schadt, CW, Zhou, J, Deng, Y

Publikováno v: Yu, H; He, Z; Wang, A; Xie, J; Wu, L; Van Nostrand, JD; et al.(2018). Divergent responses of forest soil microbial communities under elevated CO2in different depths of upper soil layers. Applied and Environmental Microbiology, 84(1). doi: 10.1128/AEM.01694-17. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/1409x4sh

© 2017 American Society for Microbiology. Numerous studies have shown that the continuous increase of atmosphere CO2concentrations may have profound effects on the forest ecosystem and its functions. However, little is known about the response of be

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::eb6d1c892904ec2dba822e18bf1450ae
http://www.escholarship.org/uc/item/1409x4sh

Long-Term Effects of Soil Remediation with Willow Short Rotation Coppice on Biogeographic Pattern of Microbial Functional Genes.

Autor: Liu W; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 101408, China., Xue K; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 101408, China.; Beijing Yanshan Earth Critical Zone National Research Station, University of Chinese Academy of Sciences, Beijing 101408, China.; Key Laboratory of Adaptation and Evolution of Plateau Biota, Chinese Academy of Sciences, Xining 810001, China., Hu R; Department of Biological Sciences, Smith College, Northampton, MA 01063, USA., Zhou J; Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, OK 73019, USA., Van Nostrand JD; Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman, OK 73019, USA., Dimitrou J; Department of Crop Production Ecology, Swedish University of Agricultural Sciences, 75007 Uppsala, Sweden., Giagnoni L; Department of Civil Engineering, Architecture, Environmental and Mathematics (DICATAM), University of Brescia, via Branze 43, 25123 Brescia, Italy., Renella G; Department of Agronomy, Food, Natural Resources, Animals and the Environment, University of Padova, viale dell'Università 16, 35020 Legnaro, Italy.

Publikováno v: Microorganisms [Microorganisms] 2022 Jan 11; Vol. 10 (1). Date of Electronic Publication: 2022 Jan 11.

Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling

Autor: Wu, L, Yang, Y, Wang, S, Yue, H, Lin, Q, Hu, Y, He, Z, Van Nostrand, JD, Hale, L, Li, X, Gilbert, JA, Zhou, J

Publikováno v: The ISME journal, vol 11, iss 9
Wu, L; Yang, Y; Wang, S; Yue, H; Lin, Q; Hu, Y; et al.(2017). Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling. ISME Journal, 11(9), 2102-2111. doi: 10.1038/ismej.2017.75. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/89h1g6rc

© The Author(s) 2017. As climate cooling is increasingly regarded as important natural variability of long-term global warming trends, there is a resurging interest in understanding its impact on biodiversity and ecosystem functioning. Here, we repo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::9af86c81cc94404bdcfc1523460c52bc
https://escholarship.org/uc/item/89h1g6rc