Microbial communities of Antarctic soil and lithic habitats

Autor: Van Goethem, Marc W.

Global climate change is predicted to significantly alter extreme terrestrial environments. The disturbance of desert ecosystems is predicted to profoundly alter key biological processes that are thought to be mediated by micro-organisms in these del

Externí odkaz: http://hdl.handle.net/2263/45915

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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.

Autor: Van Goethem, Marc W.¹ (AUTHOR), Osborn, Andrew R.² (AUTHOR), Bowen, Benjamin P.¹ (AUTHOR), Andeer, Peter F.¹ (AUTHOR), Swenson, Tami L.^1,3 (AUTHOR), Clum, Alicia² (AUTHOR), Riley, Robert² (AUTHOR), He, Guifen² (AUTHOR), Koriabine, Maxim² (AUTHOR), Sandor, Laura² (AUTHOR), Yan, Mi² (AUTHOR), Daum, Chris G.² (AUTHOR), Yoshinaga, Yuko² (AUTHOR), Makhalanyane, Thulani P.⁴ (AUTHOR), Garcia-Pichel, Ferran^5,6 (AUTHOR), Visel, Axel² (AUTHOR), Pennacchio, Len A.² (AUTHOR), O'Malley, Ronan C.^1,2 (AUTHOR), Northen, Trent R.^1,2 (AUTHOR) TRNorthen@lbl.gov

Publikováno v: Communications Biology. 11/18/2021, Vol. 4 Issue 1, p1-10. 10p.

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Learning accurate representations of microbe-metabolite interactions

Autor: Morton, James T., Aksenov, Alexander A., Nothias, Louis Felix, Foulds, James R., Quinn, Robert A., Badri, Michelle H., Swenson, Tami L., Van Goethem, Marc W., Northen, Trent R., Vazquez-Baeza, Yoshiki, Wang, Mingxun, Bokulich, Nicholas A., Watters, Aaron, Song, Se Jin, Bonneau, Richard, Dorrestein, Pieter C., Knight, Rob

Publikováno v: Nature methods

Integrating multi-omics datasets is critical for microbiome research, but multiple statistical challenges can confound traditional correlation techniques. We solve this problem by using neural networks to estimate the conditional probability that eac

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::817c7bac4033b82aac7a5fa81767fcb2
http://europepmc.org/articles/PMC6884698