Alternative stable states in the intestinal ecosystem: proof of concept in a rat model and a perspective of therapeutic implications

Autor: Van de Guchte, Maarten, Burz, Sebastian D., Cadiou, Julie, Wu, Jiangbo, Mondot, Stanislas, Blottière, Hervé M., Doré, Joël

Publikováno v: Microbiome, Vol 8, Iss 1, Pp 1-16 (2020)
Microbiome

Background Chronic immune-mediated diseases are rapidly expanding and notoriously difficult to cure. Altered relatively stable intestinal microbiota configurations are associated with several of these diseases, and with a possible pre-disease conditi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid_dedup__::fa830703ccdce43c69f8548bc73f5a5d
http://link.springer.com/article/10.1186/s40168-020-00933-7

Sculpture and the Concept of the Double among the Inca Kings

Autor: Van De Guchte, Maarten

Publikováno v: RES: Anthropology and Aesthetics, 1996 Apr 01(29/30), 256-268.

Externí odkaz: https://www.jstor.org/stable/20166953

Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract

Autor: Maguin Emmanuelle, Ehrlich S Dusko, Bessières Philippe, Nicolas Pierre, van de Guchte Maarten

Publikováno v: BMC Evolutionary Biology, Vol 7, Iss 1, p 141 (2007)

Abstract Background While genes that are conserved between related bacterial species are usually thought to have evolved along with the species, phylogenetic trees reconstructed for individual genes may contradict this picture and indicate horizontal

Externí odkaz: https://doaj.org/article/22be0ef455054af391d5dcfb54385612

An integrated catalog of reference genes in the human gut microbiome

Autor: Li, Junhua, Jia, Huijue, Cai, Xianghang, Zhong, Huanzi, Feng, Qiang, Sunagawa, Shinichi, Arumugam, Manimozhiyan, Kultima, Jens Roat, Prifti, Edi, Nielsen, Trine, Juncker, Agnieszka Sierakowska, Manichanh, Chaysavanh, Chen, Bing, Zhang, Wenwei, Levenez, Florence, Wang, Juan, Xu, Xun, Xiao, Liang, Liang, Suisha, Zhang, Dongya, Zhang, Zhaoxi, Chen, Weineng, Zhao, Hailong, Al-Aama, Jumana Yousuf, Edris, Sherif, Yang, Huanming, Wang, Jian, Hansen, Torben, Nielsen, Henrik Bjørn, Brunak, Søren, Kristiansen, Karsten, Guarner, Francisco, Pedersen, Oluf, Dore, Joel, Ehrlich, Stanislav, Bork, Peer, Wang, Jun, Pons, Nicolas, Le Chatelier, Emmanuelle, Batto, Jean-Michel, Kennedy, Sean, Haimet, Florence, Winogradsky, Yohanan, Cultrone, Antonietta, Leclerc, Marion, Juste, Catherine, Guedon, Eric, Delorme, Christine, Layec, Séverine, Kaci, Ghalia, Van De Guchte, Maarten, Vandemeulebrouck, Gaetana, Jamet, Alexandre, Dervyn, Rozenn, Sanchez, Nicolas, Blottiere, Herve, Maguin, Emmanuelle, Renault, Pierre, Tap, Julien

Publikováno v: Nature Biotechnology
Nature Biotechnology, Nature Publishing Group, 2014, 32, pp.834-841. ⟨10.1038/nbt.2942⟩
Nature Biotechnology 32 (2014) 8
Nature Biotechnology, 32(8), 834-841

Many analyses of the human gut microbiome depend on a catalog of reference genes. Existing catalogs for the human gut microbiome are based on samples from single cohorts or on reference genomes or protein sequences, which limits coverage of global mi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::683b18617e0dc8cbbb23348542f3b805
https://doi.org/10.1038/nbt.2942

Transcriptional interactions suggest niche segregation among microorganisms in the human gut

Autor: Plichta, Damian Rafal, Juncker, Agnieszka Sierakowska, Bertalan, Marcelo, Rettedal, Elizabeth, Gautier, Laurent, Varela, Encarna, Manichanh, Chaysavanh, Fouqueray, Charlène, Levenez, Florence, Nielsen, Trine, Dore, Joel, Machado, Ana Manuel Dantas, de Evgrafov, Mari Cristina Rodriguez, Hansen, Torben, Jorgensen, Torben, Bork, Peer, Guarner, Francisco, Pedersen, Oluf, Consortium, MetaHit, Sommer, Morten O. A., Ehrlich, S. Dusko, Sicheritz-Ponten, Thomas, Brunak, Soren, Nielsen, H. Bjorn, Almeida, Mathieu, Batto, Jean-Michel, Blottiere, Herve, Cultrone, Antonietta, Delorme, Christine, derwyn, rozenn, Guédon, Eric, Haimet, Florence, Jamet, Alexandre, Juste, Catherine, Kennedy, Sean P., Kaci, Ghalia, Layec, Séverine, Leclerc, Marion, Léonard, Pierre, Maguin, Emmanuelle, Pons, Nicolas, Renault, Pierre, Sanchez, Nicolas, Van De Guchte, Maarten, Van Hylckama Vlieg, Johan, Vandemeulebrouck, Gaetana, Winogradsky, Yohanan

Publikováno v: Nature Microbiology
Nature Microbiology, Nature Publishing Group, 2016, 1 (11), pp.1-6. ⟨10.1038/NMICROBIOL.2016.152⟩
Plichta, D R, Juncker, A S, Bertalan, M, Rettedal, E, Gautier, L, Varela, E, Manichanh, C, Fouqueray, C, Levenez, F, Nielsen, T, Doré, J, Machado, A M D, De Evgrafov, M C R, Hansen, T, Jørgensen, T, Bork, P, Guarner, F, Pedersen, O, Sommer, M O A, Ehrlich, S D, Sicheritz-Ponten, T, Brunak, S & Nielsen, H B 2016, ' Transcriptional interactions suggest niche segregation among microorganisms in the human gut ', Nature Microbiology, vol. 1, no. 11, 16152 . https://doi.org/10.1038/nmicrobiol.2016.152
Plichta, D R, Juncker, A S, Bertalan, M, Rettedal, E, Gautier, L, Varela, E, Manichanh, C, Fouqueray, C, Levenez, F, Nielsen, T, Doré, J, Machado, A M D, de Evgrafov, M C R, Hansen, T, Jørgensen, T, Bork, P, Guarner, F, Pedersen, O, Sommer, M O A, Ehrlich, S D, Sicheritz-Pontén, T, Brunak, S & Nielsen, H B 2016, ' Transcriptional interactions suggest niche segregation among microorganisms in the human gut ', Nature Microbiology, vol. 1, 16152 . https://doi.org/10.1038/nmicrobiol.2016.152
Nature Microbiology, 2016, 1 (11), pp.1-6. ⟨10.1038/NMICROBIOL.2016.152⟩

The human gastrointestinal (GI) tract is the habitat for hundreds of microbial species, of which many cannot be cultivated readily, presumably because of the dependencies between species 1. Studies of microbial co-occurrence in the gut have indicated

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c734271ce980bfa0fc3ab3d6705a042e
https://hal.archives-ouvertes.fr/hal-01533942