From deep TLS validation to ensembles of atomic models built from elemental motions (vol 71, pg 1668, 2015)

Autor: Urzhumtsev, A, Afonine, PV, Van Benschoten, AH, Fraser, JS, Adams, PD

Publikováno v: Urzhumtsev, A; Afonine, PV; Van Benschoten, AH; Fraser, JS; & Adams, PD. (2016). From deep TLS validation to ensembles of atomic models built from elemental motions (vol 71, pg 1668, 2015). ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 72, 1073-1075. doi: 10.1107/S2059798316013048. UCSF: Retrieved from: http://www.escholarship.org/uc/item/0s2455rk

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::b39ea14bb0f70337f83ba550750fcae5
http://www.escholarship.org/uc/item/0s2455rk

From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum.

Autor: Urzhumtsev A; Centre for Integrative Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire, 1 rue Laurent Fries, BP 10142, 67404 Illkirch, France., Afonine PV; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Van Benschoten AH; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA., Fraser JS; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA., Adams PD; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

Publikováno v: Acta crystallographica. Section D, Structural biology [Acta Crystallogr D Struct Biol] 2016 Sep 01; Vol. 72 (Pt 9), pp. 1073-1075. Date of Electronic Publication: 2016 Aug 31.

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.

Autor: Keedy DA; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States., Kenner LR; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States., Warkentin M; Department of Physics, Cornell University, Ithaca, United States., Woldeyes RA; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States., Hopkins JB; Department of Physics, Cornell University, Ithaca, United States., Thompson MC; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States., Brewster AS; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, United States., Van Benschoten AH; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States., Baxter EL; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States., Uervirojnangkoorn M; Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.; Howard Hughes Medical Institute, Stanford University, Stanford, United States., McPhillips SE; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States., Song J; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States., Alonso-Mori R; Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, United States., Holton JM; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, United States.; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States.; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, United States., Weis WI; Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.; Department of Structural Biology, Stanford University, Stanford, United States.; Department of Photon Science, SLAC National Accelerator Laboratory, Menlo Park, United States., Brunger AT; Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.; Howard Hughes Medical Institute, Stanford University, Stanford, United States.; Department of Structural Biology, Stanford University, Stanford, United States.; Department of Photon Science, SLAC National Accelerator Laboratory, Menlo Park, United States., Soltis SM; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States., Lemke H; Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, United States., Gonzalez A; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States., Sauter NK; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, United States., Cohen AE; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States., van den Bedem H; Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, United States., Thorne RE; Department of Physics, Cornell University, Ithaca, United States., Fraser JS; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, United States.

Publikováno v: ELife [Elife] 2015 Sep 30; Vol. 4. Date of Electronic Publication: 2015 Sep 30.

Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles.

Autor: Van Benschoten AH; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA 94158, USA., Afonine PV; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Terwilliger TC; Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA., Wall ME; Computer, Computational, and Statistical Sciences Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA., Jackson CJ; Research School of Chemistry, Australian National University, Canberra, ACT 2601, Australia., Sauter NK; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Adams PD; Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA., Urzhumtsev A; Centre for Integrative Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS-INSERM-UdS, 1 Rue Laurent Fries, BP 10142, 67404 Illkirch, France., Fraser JS; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA 94158, USA.

Publikováno v: Acta crystallographica. Section D, Biological crystallography [Acta Crystallogr D Biol Crystallogr] 2015 Aug; Vol. 71 (Pt 8), pp. 1657-67. Date of Electronic Publication: 2015 Jul 28.

Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine.

Autor: Williams BB; Department of Bioengineering and Therapeutic Sciences and the California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA., Van Benschoten AH; Department of Bioengineering and Therapeutic Sciences and the California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA., Cimermancic P; Department of Bioengineering and Therapeutic Sciences and the California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA., Donia MS; Department of Bioengineering and Therapeutic Sciences and the California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA., Zimmermann M; ETH Zurich, Institute of Molecular Systems Biology, Zurich 8093, Switzerland., Taketani M; Department of Bioengineering and Therapeutic Sciences and the California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA., Ishihara A; Faculty of Agriculture, Tottori University, Koyama, Tottori 680-8550, Japan., Kashyap PC; Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA., Fraser JS; Department of Bioengineering and Therapeutic Sciences and the California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA., Fischbach MA; Department of Bioengineering and Therapeutic Sciences and the California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, CA 94158, USA. Electronic address: fischbach@fischbachgroup.org.

Publikováno v: Cell host & microbe [Cell Host Microbe] 2014 Oct 08; Vol. 16 (4), pp. 495-503. Date of Electronic Publication: 2014 Sep 25.